Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1334 ATGTTTATCCTAAGCCTTCAGCACCCACGAACCCTACCCTCTGCCTTAACCAGTAGCCACTTCGATCGTAGCTCATACGGCCATCGACAACTCCTTCACAACCACCGAGAACCTCCCTTGGATAAGTCACGGCCGTCGAAAGCTTCCACGATAGCTTCTTGTACAGCCACCGAGAGCTTCCTCGATAGCTACTTCATGGCACGAAGGCTTCTTCCACGGCCAACGGAGCTTTTCCATAGCCACTGGAGCTTCTTCCTCAACAGGTTCTTCCCACAAATCAATCGAGAGCCACGAAGGAGTTTTCTCACGGTGTTGGAGTTGGGCGCCGAATTGTTGGAATCTTGGATTTGGTGCTTCGATGTGAAATTAGGGTTTTGGCCTGAGAGTTTCAAAAGCGAATACGTCGTTTCGGATGGTTCTAAGATGATAATTAAGCGGACTATGAAAATTGAAATGCCGAACCTGAAACGGTGTAAGCTAGAGGAGCACGACGCCGAGGAGTATGGGTATGCGGCTGTTCCAAAGAAGCGGAGGGTTAATGGGTTCTATTCTCTTGGTATGCCGGGTGAGGCTGAGGATTTTAGCAGTGGTTCAGGCTCGTGGTGCAGTGAAGGTTCTTATTGGGCTAGTGAGGTTCTATCAAATTCAAATTCTGTGCCATTGAATTGTAGAACAGCAATAGAGCGAGGCTCAGAAAGGATTCGGCCTCCACTATTGCGGTCGTCGCGTGGTCGCTCTCAAGTGCTTCCATCGAGGTTCAATGATTCGGTCATTGATACATGGAAGAATGGAAGAATCAAAGTGGAGGACACTGACTCCAGCTTTGAAGATGATAATATTTTAGTTGAAGATAGTGCGGGGGTTAGTGGATTGGGATATGTAAAACTTGGTAAGGGAAACAAGTACAACTCCAAAAAGTCTAATTATTATTCATATCCTGACATGGAGGAGGAGGAATCGGGATTCGATGGTCTAGTTTTAAGCAACTTTGACCATCGGAAGCTTGCAAATTCGTTTAGTACCACTAGAACAACGGTGAACGGGAATCCTTCTTCAGCAGTTAAAACTGAAAGTTATACCTCAGGCCTAAGTTTTGAGTGTGTGGACGAAAAGACTAGTCGAAATGCTGAAAAAAGGAAAGATATCTACAAACCGGAGGATTTTGCTTTGGGCGACATTGTTTGGGCGAAGTGTGGAAAGAGATATCCTGCTTGGCCTGCCGTAGTGATTGATCCCATATTGCAAGCTCCCAAGTCCGTACTGAGCTGTTGCGTTCCTGGTGCAATTTGCGTGATGTTTTTTGGGTATTCAAAAAATGGAAAGCAAAGGGACTATGCATGGGTGAAGCAGGGAATGATATTCCCCTTCATGGAATTCATGGACAGATTCCAGGGTCAGACTCGGCTGTACAAGAGCAAGCCAAGTGACTTTAAGATGGCACTGGAAGAGGCGTTGTTGGCAGAAGATGGTTTTCTGGATTCACATTTGGGAGCTGACCAAATAACAAATGTAGAAGCTCATTCCAGTGGGTTTATAGAGGCTGCAAGTTCATATGTTGATCAGAAATATTACTCTCAAGACCAGGATATAAGACCATGTGCTGGCTGTGGTCTGGCTTTGCCATCCAAAACCATGAAGAAGATTAGAGATTCAAGTTCTGCAGCTCAAATTTACTGTAAACTTTGTGCAAAGTTGCGAAAATCAAAACAATACTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGAAATTGGGTATGCTGTGATGGTTGCAATGTTTGGGTGCATGCCGAGTGTGATAAAATCTCCAGTAAACTTTTTAAGGATCTGGAAAATACAGATTACTATTGCCCTGACTGCAAAGCAAATTTTAACTCTAAATTTGTAGCATCACAAACATACGAGCCAAAAATCAAATCAATGGAAAATAGCCAAAAACCTGTTATACCTGATAAGGTAACAGTGGTGTGCAATGGCATGGAAGGATTTTACATTCCAAAGCTTCATCTAGTTGTGTGCAAGTGTGGCTCATGTGGGGTACGGAAACAGACACTGAGTGAATGGGAACGGCATACTGGTTGCAGAGCTAAAAAATGGAAATATAGTGTGAAAGTGAAGAGTACAATGCTTCCGCTGGAAAAATGGATCACAGAAAACAATACACAAGGTGGAGTTTCTCTAAGGTTAGATCAGCAGCAGATACTTGCCTTTCTACAAGAGAAGTATGAACCAGTCTGTCCAAAATGGACTACAGAAAGATGTGCCGTTTGTAGATGGGTTGAAGATTGGGATGATAACAAAATTATCATCTGCAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGAGCAAAGAATGTTAAGGATTTTACTTCCTGGGTTTGTAGAGTGTGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTGTGTCCTGTAAAAGGGGGTGCTCTAAAGCCAACTGATGTTGAGATGCTATGGGTTCATGTCACATGTGCTTGGTTCCGGCCTGAAGTTGGATTTTCAAACCATGAGACAATGGAACCTGCCTTTGGAATCCTTAAAATTCCTCCAAATTCCTTTCTGAAGACTTGCGTTATCTGTAAGCAAGGCCATGGATCCTGCACTAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCATCTAGAGCAGGATACAGCATGGAACTGCATTCTATGGAGAAGAATGGAGTTCAGATAATAAAGAAGTTAATATACTGTGCAGTTCACAGGCTCCCAAACCCAGATTCTGTAATGGTTGTACATACTCCCCTAGGGGTCTTTTCTCCAAGAACTTCCCTGCAAAATCACAAGGGGTGTTTCAGGGGATCAAGGCTGGCATCATCAAAGAACGTGGAACTTCTTGAATCTTCAACCTCAGAGACTGAGTTTGAACCACTCTCTGCTGCAAGATGCCGACTTTACAGGAGGTCTTCCAAGAAGGCTGATGTGCCAATAATTCACTTATTGAGGGGACTAAGTCGCCACTCTTTAAGTGAAATAATTCAATTAAACAGTTCTAAGGATTCAGAAGATTCTAAAGTATTTACTTCATTCAAGGAACGTCTTCACCATTTGCAGAAAACTGAAAACCATCGAGTTTGCTTTGGAAAATCAGGTATACACGGATGGGGCCTCTTTGCTAGAAGAGATATACAAGAAGGGGAAATGGTTGCTGAGTATCGAGGTGAGCAGGTAAGGCGAAGTGTTGCTGATATGAGGGAGGCTAAGTATCGTTCAGAAGGCAAAGACTGTTATCTGTTCAAGATCAGTGAGGAAGTGGTCATTGACGCAACATATAAAGGCAATATAGCACGCCTAATAAACCACTCCTGTACTCCTAACTGCTATGCAAGGATTATGAGTCTGGGTGCTGAGGAGAGCCGGATTGTCCTTATAGCCAAGACCCATGTTCTTGCTGGAGAAGAACTAACTTATGATTACTTGTTTGATCCAGATGAGCGGGATGAACTGAAAGTTCCTTGCCTTTGTAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 3558 0.4354 MFILSLQHPRTLPSALTSSHFDRSSYGHRQLLHNHREPPLDKSRPSKASTIASCTATESFLDSYFMARRLLPRPTELFHSHWSFFLNRFFPQINREPRRSFLTVLELGAELLESWIWCFDVKLGFWPESFKSEYVVSDGSKMIIKRTMKIEMPNLKRCKLEEHDAEEYGYAAVPKKRRVNGFYSLGMPGEAEDFSSGSGSWCSEGSYWASEVLSNSNSVPLNCRTAIERGSERIRPPLLRSSRGRSQVLPSRFNDSVIDTWKNGRIKVEDTDSSFEDDNILVEDSAGVSGLGYVKLGKGNKYNSKKSNYYSYPDMEEEESGFDGLVLSNFDHRKLANSFSTTRTTVNGNPSSAVKTESYTSGLSFECVDEKTSRNAEKRKDIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVKQGMIFPFMEFMDRFQGQTRLYKSKPSDFKMALEEALLAEDGFLDSHLGADQITNVEAHSSGFIEAASSYVDQKYYSQDQDIRPCAGCGLALPSKTMKKIRDSSSAAQIYCKLCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENTDYYCPDCKANFNSKFVASQTYEPKIKSMENSQKPVIPDKVTVVCNGMEGFYIPKLHLVVCKCGSCGVRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWITENNTQGGVSLRLDQQQILAFLQEKYEPVCPKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVGFSNHETMEPAFGILKIPPNSFLKTCVICKQGHGSCTSCCKCATYFHVMCASRAGYSMELHSMEKNGVQIIKKLIYCAVHRLPNPDSVMVVHTPLGVFSPRTSLQNHKGCFRGSRLASSKNVELLESSTSETEFEPLSAARCRLYRRSSKKADVPIIHLLRGLSRHSLSEIIQLNSSKDSEDSKVFTSFKERLHHLQKTENHRVCFGKSGIHGWGLFARRDIQEGEMVAEYRGEQVRRSVADMREAKYRSEGKDCYLFKISEEVVIDATYKGNIARLINHSCTPNCYARIMSLGAEESRIVLIAKTHVLAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1334 1185 Gene3D SET domain 1010 1185 IPR046341 -
Bisa10g1334 1185 Pfam SET domain 1054 1159 IPR001214 GO:0005515
Bisa10g1334 1185 ProSiteProfiles PWWP domain profile. 390 459 IPR000313 -
Bisa10g1334 1185 CDD PHD_ATX3_4_5_like 755 801 IPR042011 -
Bisa10g1334 1185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 749 804 IPR013083 -
Bisa10g1334 1185 ProSiteProfiles Zinc finger PHD-type profile. 569 625 IPR019787 -
Bisa10g1334 1185 PANTHER PHD FINGER PROTEINS 186 1162 - -
Bisa10g1334 1185 Pfam PWWP domain 391 486 IPR000313 -
Bisa10g1334 1185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 563 626 IPR013083 -
Bisa10g1334 1185 SMART PHD_3 866 922 IPR001965 -
Bisa10g1334 1185 SMART PHD_3 755 802 IPR001965 -
Bisa10g1334 1185 SMART PHD_3 571 623 IPR001965 -
Bisa10g1334 1185 Gene3D - 381 489 - -
Bisa10g1334 1185 ProSiteProfiles Extended PHD (ePHD) domain profile. 807 922 IPR034732 -
Bisa10g1334 1185 SMART PWWP_4 388 457 IPR000313 -
Bisa10g1334 1185 SMART set_7 1043 1166 IPR001214 GO:0005515
Bisa10g1334 1185 CDD PWWP_AtATX3-like 391 491 - -
Bisa10g1334 1185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 805 923 IPR013083 -
Bisa10g1334 1185 FunFam Histone-lysine N-methyltransferase 805 924 - -
Bisa10g1334 1185 CDD SET_SETD1-like 1032 1181 - -
Bisa10g1334 1185 SUPERFAMILY FYVE/PHD zinc finger 754 818 IPR011011 -
Bisa10g1334 1185 CDD PHD_TCF19_like 572 622 - -
Bisa10g1334 1185 Pfam PHD-finger 768 802 - -
Bisa10g1334 1185 FunFam Histone-lysine N-methyltransferase 1017 1185 - -
Bisa10g1334 1185 ProSiteProfiles Zinc finger PHD-type profile. 753 804 IPR019787 -
Bisa10g1334 1185 ProSitePatterns Zinc finger PHD-type signature. 756 801 IPR019786 -
Bisa10g1334 1185 ProSiteProfiles SET domain profile. 1043 1160 IPR001214 GO:0005515
Bisa10g1334 1185 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 138 1185 IPR025780 -
Bisa10g1334 1185 SMART PostSET_3 1169 1185 IPR003616 -
Bisa10g1334 1185 ProSiteProfiles Post-SET domain profile. 1169 1185 IPR003616 -
Bisa10g1334 1185 SUPERFAMILY FYVE/PHD zinc finger 569 627 IPR011011 -
Bisa10g1334 1185 CDD ePHD_ATX3_4_5_like 810 921 IPR041955 -
Bisa10g1334 1185 Pfam PHD-finger 571 624 IPR019787 -
Bisa10g1334 1185 SUPERFAMILY Tudor/PWWP/MBT 381 489 - -
Bisa10g1334 1185 SUPERFAMILY SET domain 1037 1182 IPR046341 -
Bisa10g1334 1185 Pfam PHD-zinc-finger like domain 809 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1334 Bisa-ChrBisa10 33837028 33851264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1334 528 596 EF-hand Containing Proteins AT5G28340 56.522 6.03e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa10g1334 zf-HC5HC2H_2 4.5e-28 CL0390