Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1305 ATGGAAAGAGAAAAGATTTTCTCCGACTGGCGGGGCGCTGAGAGCATGAAGGTGGGTCTCGGAGGTATCCTGTGGAACGACGACGAGCGAGCCATGGTTGCCGCGGTTCTGGGCACTCGAGCTTTCGATTACTTGGTGAACAACTCCGTGTCGAGTGAGAATCTGTTAATGGCCGTCGGGAGCGACGAGAATCTGCAGAACAAGCTCTCGGATCTTGTGGAACGTCCAAACGTATCGAATTTCAGTTGGAACTACGCGATTTTCTGGCAAATTTCGCAGTCGAAATCCGGCGATTGGGTTTTGGGCTGGGGCGATGGGTGTTGCAGAGAGCCCAAGGAAGGAGAAGAAGTCGGATTCAGAGGAATCCTCAGCCTCCGCATGGAGGACGAGATGCAGCAGAGGATGAGGAAGAGGGTGCTACAGAAACTCCACACAACGTTTGGTGGTTCAGAGGAGGACAATTACGCCTTTGGATTGGACCGTGTGACTGATACTGAGATGTTCTTTCTTGCCTCTATGTACTTCTCCTTCCCTCGCGGTCATGGTGGTCCAGGTAAGTGCCTTGCATCTGGTAAACATTTGTGGCTCTCGGATGCATTGAAATCTAGCACTGAATATTGTGTGAGGGCCTTTCTGGCTAAATCAGCTGGAATGCAGACCATTGTTTTGATCCCTACTGATATGGGAGTGGTTGAGTTAGGTTCGGTGAGGATGGTTAAGGAGAACTTAGAACTGTTGCATGCGATTAAATCCGTGTTTTCGACTCAATCTGCATTCCACAGGGTTAAGCCAATTTCACCTTTGCCTGTGGTGAATGAGAAGAAAGATGAGAATGCCATTGTTCCTGGTACGGCAGTAGCTGACAAAGTTGAGGTAGTTCTAAAGATTTTCGGGCAGGATTTGAGCATGACGAATTCGGGGCGAACAACCCAATTTAGGGAGAAACTTGCTATTAGGAAAATGGAGGAGAGGCCCTGGGGAGGAGGGAGTCACCCCAATGGGAATGGGACTAGGTTTCCAAACACTCAGAATGGTGGTGTTCATGGTTCAAATTGGACAGCTAACCAAGGTGTGAGACAAGCTAGCCCTGCAGAAATTTATGCTCCCAGGTCAGCAGCAAGCAGTGTCGTGGTCCCGGACCTAGTTAACGGGGCTAGGCAAGATTTCCGGCTTAACAACTATCAACCGCAGAGGCAGGTGCAAATGCAAATTGATTTCACAGGAGCCACTTCAAGGCCTGCTGCTAGACCAGTTTCTGGTGAGTCAGAGCCTGATGATGCTGATATTAAGGAGGAGCAGCCAGGTGCAAATGATGAAAGGAGGCCCAGGAAACGCGGAAGAAAGCCGGCTAATGGAAGGGAGGAGCCCCTGAACCATGTGGAAGCAGAGAGGCAAAGGCGCGAGAAGCTGAACCAACGGTTTTATTCATTACGAGCTGTTGTGCCCAACATCTCCAAGATGGACAAAGCCTCTTTGTTGGGAGATGCCATTGCTTACATCAAGGATCTTCAGGCGAAACTCAAGGTGATGGAATCTGAAAGGGAGAGGTTTGGAAGCACTTCAAGGGATGGATCAATGGACTCCAACCTTCACCAGACTCAAGCTCCTAATGTGGAAATTGAAACTGTCAAAGATGAGGTCATTGTGAAGGTGAGCTGCCCTATTGATACTCACCCACTTTCAAAAATAATGCAATCATTCAATGAGGCACAGATAAGTATTGTTGATTCAAAACTTGCTGCTTCAAATGATACTGTTTTCCATACATTTGTGGTCGAGTCTCAAGGATCCGAGCAGCTGACAAAGGAGAGGTTGATTGCTGCATTTTCCCGCGAATCCAACTCACCGTAG 1851 0.4873 MEREKIFSDWRGAESMKVGLGGILWNDDERAMVAAVLGTRAFDYLVNNSVSSENLLMAVGSDENLQNKLSDLVERPNVSNFSWNYAIFWQISQSKSGDWVLGWGDGCCREPKEGEEVGFRGILSLRMEDEMQQRMRKRVLQKLHTTFGGSEEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCLASGKHLWLSDALKSSTEYCVRAFLAKSAGMQTIVLIPTDMGVVELGSVRMVKENLELLHAIKSVFSTQSAFHRVKPISPLPVVNEKKDENAIVPGTAVADKVEVVLKIFGQDLSMTNSGRTTQFREKLAIRKMEERPWGGGSHPNGNGTRFPNTQNGGVHGSNWTANQGVRQASPAEIYAPRSAASSVVVPDLVNGARQDFRLNNYQPQRQVQMQIDFTGATSRPAARPVSGESEPDDADIKEEQPGANDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNISKMDKASLLGDAIAYIKDLQAKLKVMESERERFGSTSRDGSMDSNLHQTQAPNVEIETVKDEVIVKVSCPIDTHPLSKIMQSFNEAQISIVDSKLAASNDTVFHTFVVESQGSEQLTKERLIAAFSRESNSP 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1305 616 CDD ACT_UUR-ACR-like 548 605 - -
Bisa10g1305 616 PANTHER MYC 42 608 IPR045084 GO:0003700|GO:0006355
Bisa10g1305 616 MobiDBLite consensus disorder prediction 419 465 - -
Bisa10g1305 616 Gene3D - 447 519 IPR036638 GO:0046983
Bisa10g1305 616 MobiDBLite consensus disorder prediction 323 354 - -
Bisa10g1305 616 SMART finulus 460 509 IPR011598 GO:0046983
Bisa10g1305 616 MobiDBLite consensus disorder prediction 334 354 - -
Bisa10g1305 616 FunFam Transcription factor bHLH13 447 521 - -
Bisa10g1305 616 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Bisa10g1305 616 Pfam Helix-loop-helix DNA-binding domain 458 504 IPR011598 GO:0046983
Bisa10g1305 616 Coils Coil 500 520 - -
Bisa10g1305 616 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 65 253 IPR025610 -
Bisa10g1305 616 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 518 IPR036638 GO:0046983
Bisa10g1305 616 MobiDBLite consensus disorder prediction 408 465 - -
Bisa10g1305 616 CDD bHLH_AtAIB_like 451 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1305 Bisa-ChrBisa10 33138294 33140237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1305 18 612 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.840 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa10g1305 bHLH-MYC_N 1.8e-55 CL0161