Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1300 ATGGCACATCTGGGGTGTAATCTCAGGGACCCGCCCGGTTCTCAAGCGGATACAGGTTTGGAAGATGACGATCTGTACACAGAGTTATGGAAGTTGTGTGCAGGGCCTCTGGTTGATGTTCCTCGTGCTGGAGAGAGAGTTTTCTACTTTCCTCAGGGTCACATGGAACAATTGCAAGCATCAACTAATCAGGAGTTGAACCAACAAATTCCCCATTTCAATATTTCATCTAAGATTCTATGCCGTGTAATGGACATTCAGTTATTGGCGGAACAAGACACTGATGAAGTTTATGCTCGGATTACTTTGCTTCCAGAATCAGATCAAACTGAGCCAACGAGTCCTGATCCATCACCACCCGAGACTCGGACACAAAATTTTCATTCATTTTGCAAGATATTAACGGCCTCTGATACTAGCACACATGGAGGGTTTTCGGTCCTGCGGAAGCATGCTAATGAGTGCCTACCTCAATTGGACATGACCCAAGCAACCCCAACGCAGGAGTTGGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGAAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTCACTTCCAAAAGATTGGTGGCTGGAGATGCTTTTGTGTTCTTGAGAGGGGAGAAAGGGGAGCTGAGAGTCGGTGTCCGGCGCCTTGCCCGGCAACAGAGTCCAATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTACTTGCTACTGCTTGCCATGCTGTTGCCACTCGCACTATGTTCGTAGTTTATTACAAACCAAGGACTAGACAGTATATAATTGGTTTGAACAAATATCTGGAGGCAATCAACAATAAGTTCTCAGTTGGCATGCGTTTCAAGATGAGATTCGAGGGAGATGACTCGCCTGAGAGAAGGTTTTCGGGTACCATTGTTGGTGTTGGCGATGTATCTCCAGAGTGGCCAGACTCTAAGTGGCGGTCATTGAAGGTACAATGGGATGAACCAGCAACAATTCCAAGGCCAGAGAGGGTTTCTCCTTGGGAGATAGAACCGTTTGTTGCTTCTACAGCTCTCAATCTCGTTCAACCAGTAGTAAAGAGCAAAAGATCCCGACCTGCCGATGCTCCATCTTCTGAAATGGCTTCCAATTCAGCTGCTTCACCCTTCTGGTATCACGGATCATCCCAGTCCTGTGAGCTTTCTCAATTGGGTGGTGCCACAGAAATACAGAGCAAAGAAAACCAGGTTGTATGGAATCCAAGGCAGAAAGATATCAGTGGCAATCCTATGAATAACAACAGCTCTGGCAACTCTAGAGTCCGTGTGGAAGGAATGTGGCCTCCTTCACATTTGAATATCTCTTCGAACCATTTTCCTGACCTGAAAAGCAACAAAGCTGTTTCAGCACGACCTTCAAGTTCTGGTTATCTTCCTGTTTCATGTAGGCCAAATGATGGCCAAGTTGAGAATGGGAAGAAATCTGAAAGTTCTGTGGGTTGCCGGTTATTCGGAGTTAATTTGACTAATAACTCTAGCAATGTTGCTCCTCCAGAGAAAGAACTAGGAGGCCGCACAACTATGATTCCTACTAGTCCCAAAGAATCTCCTCTTCCTGCCTGTGAAACTGAGAGGAGTCAGAATCCCAATTGTTCAGTGTCCAAGACGGAGCAGAAGCAAGAAACATCGAATTCATCACCAAACAAGAGGCAGGGCAAGCAGGCATCTTTACCATCAACGAGGACTCGTACAAAGGTGCAAATGCAAGGTGTGGCTGTTGGTCGGGCAGTTGACTTAACCATGTTGAATGGCTATGATGATCTCATCGGCGAGCTCGAGAAATTGTTTGACATTAAGGGAGAGCTTCGCTCACAGAACAAGTGGGCAGTTACTTTCACCGACGATGAAAACGACATGATGCTTGTGGGCGATGATCCGTGGACGGAGTTCTGTAATATGGTGAAGAGGATTATCATCTATTCAAGGGAGGAAGTAAAGAAGATGAATGCAAATTGCAAGGTCCCTGCAACTTCATCAGAGGGTGAAGAGACCCTGATCAGCATGGACTCACAGAATAAGGACGAAACTCCATAA 2109 0.4614 MAHLGCNLRDPPGSQADTGLEDDDLYTELWKLCAGPLVDVPRAGERVFYFPQGHMEQLQASTNQELNQQIPHFNISSKILCRVMDIQLLAEQDTDEVYARITLLPESDQTEPTSPDPSPPETRTQNFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGEKGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATACHAVATRTMFVVYYKPRTRQYIIGLNKYLEAINNKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDVSPEWPDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASTALNLVQPVVKSKRSRPADAPSSEMASNSAASPFWYHGSSQSCELSQLGGATEIQSKENQVVWNPRQKDISGNPMNNNSSGNSRVRVEGMWPPSHLNISSNHFPDLKSNKAVSARPSSSGYLPVSCRPNDGQVENGKKSESSVGCRLFGVNLTNNSSNVAPPEKELGGRTTMIPTSPKESPLPACETERSQNPNCSVSKTEQKQETSNSSPNKRQGKQASLPSTRTRTKVQMQGVAVGRAVDLTMLNGYDDLIGELEKLFDIKGELRSQNKWAVTFTDDENDMMLVGDDPWTEFCNMVKRIIIYSREEVKKMNANCKVPATSSEGEETLISMDSQNKDETP 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1300 702 SUPERFAMILY CAD & PB1 domains 581 662 - -
Bisa10g1300 702 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Bisa10g1300 702 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa10g1300 702 Gene3D - 127 231 IPR015300 -
Bisa10g1300 702 MobiDBLite consensus disorder prediction 681 702 - -
Bisa10g1300 702 MobiDBLite consensus disorder prediction 468 591 - -
Bisa10g1300 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa10g1300 702 Gene3D - 582 674 - -
Bisa10g1300 702 FunFam Auxin response factor 581 674 - -
Bisa10g1300 702 Gene3D - 291 363 - -
Bisa10g1300 702 MobiDBLite consensus disorder prediction 104 124 - -
Bisa10g1300 702 MobiDBLite consensus disorder prediction 546 591 - -
Bisa10g1300 702 ProSiteProfiles PB1 domain profile. 586 669 IPR000270 GO:0005515
Bisa10g1300 702 Pfam AUX/IAA family 563 622 IPR033389 -
Bisa10g1300 702 Pfam AUX/IAA family 629 668 IPR033389 -
Bisa10g1300 702 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Bisa10g1300 702 MobiDBLite consensus disorder prediction 468 486 - -
Bisa10g1300 702 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Bisa10g1300 702 CDD B3_DNA 128 230 IPR003340 GO:0003677
Bisa10g1300 702 MobiDBLite consensus disorder prediction 507 522 - -
Bisa10g1300 702 FunFam Auxin response factor 128 232 - -
Bisa10g1300 702 SMART B3_2 130 232 IPR003340 GO:0003677
Bisa10g1300 702 FunFam Auxin response factor 291 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1300 Bisa-ChrBisa10 32975497 32979675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1300 25 673 B3 DNA Binding Superfamily AT4G23980 58.939 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa10g1300 B3 7e-21 CL0405