Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1279 ATGAATGATGGGATTGTCCTCAGGTTCTTTAGGTTGGAAAAACTCATGGGAATATCTCTTGTCAGCTTGTTGATGGATAAATCCAGTGACATGAGGCTGTACATTTCGGAGAGTTCAGGGGATATTTTTGGTGAGATTATTCATTTGGAGAAACAGTGTGTAAATTCTTCAGTGAGCTCAGGCTCCTCAGAATCTCGCGGGTCAAATTACAGGCTGACAAATCGAGAAGATGAAGCGTGCTTATTGAGCCCAGTTCCTGCAGGATGCCTCCCTGGAATACATTGTCCATTCGTCAATAGGTTGCCTCCACCAGGAGAGAAGGCAAAAAAATTAGGGCTTCGTTATAATTGGCCTGTCCTCAAGAGTATAAAAACAGTTATCGCCACATCGTCTCTCAAGTCGCAGGGATCTCTGTATTCTGAAGCTTTAAGAGAAGGGAAACAAGTTCGAGCTTCTCAGGTGCACTTCATCTCTCAGGAATTTGGAGGCATAGTTGCGAAGATGAGACCGGTCTTTGTTGGTAACTTTGAGTACGATACCCGTCAATCAGAGCTTGAACGCCTGTTCGCCAAGTATGGGAGGATTGAACGAGTGGACATGAAATCGGGTTTTGCTTTTGTGTATTATGAGGATGAGCGTGATGCTGAAGACGCAATTCATGCGCTTGACAATTTTCCATTTGGTTATGACAAGCGAAGGCTGTCTGTAGAATGGGCCAGAGGTGAGCGTGGACGTCACCGTGATGGGTCCAGAGCAAACCAGAGGCCCACAAAAACATTATTTGTGATTAACTTTGACCCAATTCGTACTAGAGTTCGTGATATAGAAAGACACTTTGAACCTTATGGGAAGGTTCTTCATGTTCGGATTCGTCGGAATTTTGCATTTGTGCAGTTTGAAACTCAAGAAGATGCTACTAAAGCTCTTGAATGTACCCATATGAGCAAGATACTGGATAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGACGATGATGAGAGGGGAGACAGATTTTATGACAGTCCTAGAAGGGGATATGGGAGATCACCCAGTCCAATTCCTCGCAGGCGACCTAGTCCTGATTATGGGCGCCCACGCAGCCCTGTGTATGATAGGTACAATGGACCTGCATATGACAGGCGTAGGAGCCCTGATTATGGTAGGCCAAGGAGTCCTGATTATGGTAGGCACAGAAGTCCTGAATATGGCAGATATCGCAGCCGTTCACCAATCCGAAGGTTCCGGGGGTACTTTGTCACTTTGTGTGGTGGATTAGTGAGTAGTTCATTCTGTAGAAAAATGGACACTTCACAGTAA 1317 0.4563 MNDGIVLRFFRLEKLMGISLVSLLMDKSSDMRLYISESSGDIFGEIIHLEKQCVNSSVSSGSSESRGSNYRLTNREDEACLLSPVPAGCLPGIHCPFVNRLPPPGEKAKKLGLRYNWPVLKSIKTVIATSSLKSQGSLYSEALREGKQVRASQVHFISQEFGGIVAKMRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIHALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRFYDSPRRGYGRSPSPIPRRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPDYGRHRSPEYGRYRSRSPIRRFRGYFVTLCGGLVSSSFCRKMDTSQ 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1279 438 CDD RRM1_AtRSp31_like 169 240 - -
Bisa10g1279 438 Gene3D - 166 250 IPR012677 -
Bisa10g1279 438 Gene3D - 251 338 IPR012677 -
Bisa10g1279 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 241 IPR000504 GO:0003723
Bisa10g1279 438 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 258 409 - -
Bisa10g1279 438 FunFam Serine/arginine-rich splicing factor RS31 251 340 - -
Bisa10g1279 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 227 IPR000504 GO:0003723
Bisa10g1279 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 322 IPR000504 GO:0003723
Bisa10g1279 438 FunFam Serine/arginine-rich splicing factor RS31 168 250 - -
Bisa10g1279 438 SMART rrm1_1 259 325 IPR000504 GO:0003723
Bisa10g1279 438 SMART rrm1_1 170 237 IPR000504 GO:0003723
Bisa10g1279 438 CDD RRM2_AtRSp31_like 259 328 - -
Bisa10g1279 438 MobiDBLite consensus disorder prediction 335 404 - -
Bisa10g1279 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 329 IPR000504 GO:0003723
Bisa10g1279 438 SUPERFAMILY RNA-binding domain, RBD 169 332 IPR035979 GO:0003676
Bisa10g1279 438 MobiDBLite consensus disorder prediction 375 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1279 Bisa-ChrBisa10 32490271 32497687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1279 167 414 Eukaryotic Initiation Factors Gene Family AT4G34110 26.241 4.05e-10 60.1