Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1276 ATGATGGTAGCAGAGATATTGTCTGGTGCTTCTTCCGGTCCTGCTTCAGAACTTATTGCTAATCTTATCGATATTATAGCTGAGTGTGTATACTCTGCTGGTGATGTGCTTGTGAAGAAGGATTCTTTTCAAGAACTTGCAGCTTACTTGGAAAGAATTGAACCCATCTTAAAGGAATTGAGAAACCAAAGAGTCAGCAATGTTGAGACCTTCAATCACAGCATTGAGATTCTGAATAATCAAATTAAAAAGGGGAATAAACTAATTCAAGAATGCAGCAAGAGGAACAAGGTCTATCTACTATTGAACTCTAGAAATATTGTTAAGCGTTTAAAGAACATGACAAGTGAGATCAGCCGGGCTCTCAGTCTTATTCAACTGGCTATGTCAGATCTCTCTTCTGGAATAGTTGAAGAAATAGAGAATCTCTGTGACAATATGCAGAAAGCTGAGTTTAAGGCAGCCATAGCAGAAGAGGAGATTTTGGAGAAAATTGAGTCAGGTATACAAGAAAAGAATGTCGACCGCTCCTATGCCAATAATTTGCTGATTCTCATTGCAGAAGCTGTTGGCATTACAAATGAGAAATCAACAATGAAGAAGGAACTGGAAGAGTTCAAGAATGAAGTTGAAGACGCCCGTCTTAGGAAGGACCTAGCCGAAGCTATACAAATGGATCAGATCATAGCCTTGCTTGAAAGGGCTGATGCAGCCTCATCAACACAGGAAAAGGAAATGAGGTACTTTGCCAAACGCAAATCTCTGGGAAGTCAACCCTTAGAGCCTCTTCAGTCATTTTACTGCCCCATCACCCGAGATGTTATGGTGGACCCAGTTGAAACTTCGTCGGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAACAATTCATGTCCTCTGACCATGATTCCTTTAGATACATCAGTTTTGAGACCTAACAAAACATTGAAACAATCAATAGAAGAATGGAAGGATAGAAATACTATGATTACAATTGCTTCAATGAAAGAAAAAATCCAGTCTGGAGAGGATGATGAAATACTTCAATGTCTGGGAACTCTGCAGGATTTGTGTGACCAAAAAGATCAGCACAGGGAATGGATTGTGCTGGAGAATTACATACCAGTTCTTATACAGGTTCTTGGTGCCAGAAACCGTGAAGTAAGGAAACGTGCTCTTGTCATCCTTTGCATGCTGGCTAAGGATAGTGATGATGCTAAGGAAAGAATTAAAAATGTTGATAATGCAATTGAATCCATTGCGCCTCTTCTTGGGCGTCGTGCTGGAGAAGGAAAATTGGCAGTGGCATTACTGTTGGAATTATCCAAAAATGATAAATTACGAGAATACATTGGAAAGGCTCGAGGTTGCATACTACTATTGGTGACTATGTCTAACAGTGATGACAATCAAGCTGCAAGAGATGCTACAGAACTACTGGAGAATCTTTCATACTCTGATCACAATGTTCTGCTGATGGCAAAGGCAAATTATTTCAAGCATTTATTGCAGCGCCTCTCCACAGGACCAGATGATGTTAAATTGACCATGGCAACAACTCTAGCAGAAATGGAGTTGACCGACCACAACAAAGAGTCCCTGTTTGAAGATGGTGTGCTTGATCCTCTTCTTCACTTGGTCTCATATGGTGATCCTTCAGTGAAAACAGTAGCTATCAGAGCTCTTCGGAACATATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGTCGAGGTGCAGTAGGCCCCATCATGGACATTCTTTTCCATCATAGCTTACCACCCTCTAGTTTGCGGGAACATGTAGCTGCTATAATCATGCAACTTGCTGAATCAACCATTGCTCAAGACACCCAAACTCCAGTTTCATTATTGGAATCTGATGAATATGTTTTTAACCTCTTCTCTTTAATTAGATTCACAGTACCTGATGTGAATCGAAACATTATCCAGGCCTTTTATGCCTTGTGCCAATCCCCGTCAGCTTCATATATCAAGACCAAGCTGATAGAGTGTTCCGCTGTTCAAGTTTTGGTTCAGTTATGTGAGAATGAAAACCAAAATCTACGAGCAAGTGCTGTAAAGTTGTTGTCTTGCTTGGTAGAAAGTTGTGATGAAGCTAGCATCCTGGAGAATGTTAACCAGAGGAGCATAGAGAATTTAGTACGGATCCTTAGATCTTCTTCTGGTGAAGAGGAAACTGCTTCTGCTATGGGCATAATATGCCATCTTCCAGAAGTTCAACAGATAACTCAATGGCTTCTAGATGACGGGTTACTGCCAATCATTTACAAGTACATCCAAGAGGGGAAGGACAAAGATCTCCAGAAAAGTAACTTAGTAGAGAACTCTGTAGGCGCCCTTTTTCGTTTCACAGTTCCAACAAACTTTGAATGGCAAAGAAGTGCAGCAGAAACTGGGATCATAACTGTTTTAGTACAGTTGCTTGAATGTGGAACCATGTTAACAAAACAACGTGCAGCATTATGTCTTACTCAGTTTTCAAAGAGTTCCCCCAGGCTGAGCAGGGCAGTTCCCAAGCGAAAAGGACTTTGGTGCTTCTCAGCTCAAGCAGAAATCGGCTGCTCAGTTCATGGAGGAATCTGTTCTGTCAAGTCATCGTTTTGCCTTGTGGAGGCTGATGCTCTGGGACCTCTAACAAGGACTCTTGGAGAATCTGATACCGGAGTTTGTGAGGCTTCTTTAGATGCACTTCTGACTCTGATTGAAGGTGAGAGATTGCAGAGTGGTAGTAAAGAGCTTGAAGCAGCAAATGCCATACCAGCAATCATAAGATTTCTGGGTTCCTCATCCCCTGGGTTGCAGGAGAAGTCTCTTCATGCTTTGGAAAGGATTTTTCGGTTATTTGAGTTCAAACAGAAGTACGGACCTTCGGCTCAAATGCCTCTAGTCGACTTAACTCAGCGAGGTGGTAGCATGAGATCCACGGCAGCTAAAATATTGGCACTTCTGAACGTGCTTCATGACCAGTCTTCTTATTTCTGA 3021 0.4167 MMVAEILSGASSGPASELIANLIDIIAECVYSAGDVLVKKDSFQELAAYLERIEPILKELRNQRVSNVETFNHSIEILNNQIKKGNKLIQECSKRNKVYLLLNSRNIVKRLKNMTSEISRALSLIQLAMSDLSSGIVEEIENLCDNMQKAEFKAAIAEEEILEKIESGIQEKNVDRSYANNLLILIAEAVGITNEKSTMKKELEEFKNEVEDARLRKDLAEAIQMDQIIALLERADAASSTQEKEMRYFAKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFAEGNNSCPLTMIPLDTSVLRPNKTLKQSIEEWKDRNTMITIASMKEKIQSGEDDEILQCLGTLQDLCDQKDQHREWIVLENYIPVLIQVLGARNREVRKRALVILCMLAKDSDDAKERIKNVDNAIESIAPLLGRRAGEGKLAVALLLELSKNDKLREYIGKARGCILLLVTMSNSDDNQAARDATELLENLSYSDHNVLLMAKANYFKHLLQRLSTGPDDVKLTMATTLAEMELTDHNKESLFEDGVLDPLLHLVSYGDPSVKTVAIRALRNISSLKKNGLEMIRRGAVGPIMDILFHHSLPPSSLREHVAAIIMQLAESTIAQDTQTPVSLLESDEYVFNLFSLIRFTVPDVNRNIIQAFYALCQSPSASYIKTKLIECSAVQVLVQLCENENQNLRASAVKLLSCLVESCDEASILENVNQRSIENLVRILRSSSGEEETASAMGIICHLPEVQQITQWLLDDGLLPIIYKYIQEGKDKDLQKSNLVENSVGALFRFTVPTNFEWQRSAAETGIITVLVQLLECGTMLTKQRAALCLTQFSKSSPRLSRAVPKRKGLWCFSAQAEIGCSVHGGICSVKSSFCLVEADALGPLTRTLGESDTGVCEASLDALLTLIEGERLQSGSKELEAANAIPAIIRFLGSSSPGLQEKSLHALERIFRLFEFKQKYGPSAQMPLVDLTQRGGSMRSTAAKILALLNVLHDQSSYF 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1276 1006 SUPERFAMILY RING/U-box 254 334 - -
Bisa10g1276 1006 Gene3D - 435 633 IPR011989 -
Bisa10g1276 1006 Coils Coil 189 223 - -
Bisa10g1276 1006 Pfam Armadillo/beta-catenin-like repeat 533 572 IPR000225 GO:0005515
Bisa10g1276 1006 Coils Coil 140 160 - -
Bisa10g1276 1006 CDD RING-Ubox_PUB 266 315 IPR045210 -
Bisa10g1276 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Bisa10g1276 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1006 - -
Bisa10g1276 1006 SMART arm_5 366 406 IPR000225 GO:0005515
Bisa10g1276 1006 SMART arm_5 667 707 IPR000225 GO:0005515
Bisa10g1276 1006 SMART arm_5 875 915 IPR000225 GO:0005515
Bisa10g1276 1006 SMART arm_5 709 748 IPR000225 GO:0005515
Bisa10g1276 1006 SMART arm_5 919 959 IPR000225 GO:0005515
Bisa10g1276 1006 SMART arm_5 449 490 IPR000225 GO:0005515
Bisa10g1276 1006 SMART arm_5 532 572 IPR000225 GO:0005515
Bisa10g1276 1006 Coils Coil 75 95 - -
Bisa10g1276 1006 Gene3D - 873 1004 IPR011989 -
Bisa10g1276 1006 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 19 121 IPR008808 -
Bisa10g1276 1006 SUPERFAMILY ARM repeat 534 962 IPR016024 -
Bisa10g1276 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 332 IPR013083 -
Bisa10g1276 1006 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Bisa10g1276 1006 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Bisa10g1276 1006 CDD MLKL_NTD 19 130 - -
Bisa10g1276 1006 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Bisa10g1276 1006 Gene3D - 333 433 IPR011989 -
Bisa10g1276 1006 Gene3D - 635 857 IPR011989 -
Bisa10g1276 1006 Gene3D - 15 130 IPR036537 GO:0007166
Bisa10g1276 1006 SUPERFAMILY ARM repeat 337 617 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1276 Bisa-ChrBisa10 32447886 32458574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1276 264 1006 U-box Gene Family AT1G76390 28.911 7.67e-61 221