Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1250 ATGTCTCTCACAAGGGCTTCTGGAAAGAAGGATACTGCCCCGTTTGGGTTCTCGCCGGATAACACACCGACCCCTGTGCTCTGCCTCCTTCCTTCTCTCTCTTCTCTTCCGGAGAATCACATAAAGCCAATTAATCCCATTAAGAAGCAAATCTCAAAATTCCCCATTTATGCTGCTGGTTCTGAGTCAATCATGTCAGAAGGTGCAGAAATTGATGAGAGGGTGGACTTTGATGAGGAAAATTACATGGAGGAGATGGATGATGATGTTGAAGAACAAATAGATAACGAATGTGTGGATGGGGGTGGTGATGAAAATCTTGAACGGAATGGTACTGAAGGACATGGAGATGCAGACTCAGCAGCAGAGGATGGCAGGAAAGAACAAATGGCTGATTCAGATAGAAGTGACGATGTGCCTGAACCTATAGAGAACGAGCAAAGACCATCTTCTATCAATGAAGATGAGAAGAAGAAACATGATGAACTTCTTTCACTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGCATGTGAAAATGATTTGAGGGAGTTGTGTGAGCCAATGGGATATATTCTTGAGGTGAGATTAATGAAAGATAGGGACACTGGAGAAGGCAAAGGATATGCATTTGTGGCATTTTCAACAAAAGAGGTTGCGCAAAAGGCCATTGAAGAGTTACATAACAAGGAATTTAAGGACCCACAAAATCCAAGCAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCCTGTGCTGATTATTCACGGCAAAAGATGTCAAGTCCAAATTTCAAGTTGGATGGTAATACCCCAACTGTCACATGGGCAGATCCTAAAAACTCACCTGATCATTCTGCTTCCTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAAAGTTACTACAGAACAATTAAAAGAACTATTCCGTCGGCATGGGGAAGTAACCAAAGTGGTTATGCCACCTGGCAAGGATGGAGGAAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGATCCAGTGCATTGAAGGCTGTAAAAGATACAGAAAAATATGAAATAGATGGCCAAGTGTTGGAAGTGGTTCTTGCAAAACCTCAATCTGATAAGAAATCTGACGGAGGTTATGGCTACAGTGCCGGGCTTCATTCGAACCATCTTTCACATCCCGGATATGGTGGTTTTTCAGGAAACCTATATGGCTCTTTAGGTGCTGGATATGGCGCTGGTGCTGGTGCTGGTTATCAACAGCCAGTAATATATGGTAGGGGACCAATGCCGGCCGGGATGCAGATGGTCCCAATGGTATTACCAGATGGTCGAATTGGCTATGTTCTTCAACAGCCGGGTGTACAAATGCCACCTCCCCGTCCTCCTCGTAGGAGCGATCGAAGCAATGGTCCTGGTGGTCAGTCAGGGCGTGGCAATGATGAGAGCAGTCGTAGAAGGTACCGACCCTATTAG 1494 0.4431 MSLTRASGKKDTAPFGFSPDNTPTPVLCLLPSLSSLPENHIKPINPIKKQISKFPIYAAGSESIMSEGAEIDERVDFDEENYMEEMDDDVEEQIDNECVDGGGDENLERNGTEGHGDADSAAEDGRKEQMADSDRSDDVPEPIENEQRPSSINEDEKKKHDELLSLPPHGSEVFIGGLPRDACENDLRELCEPMGYILEVRLMKDRDTGEGKGYAFVAFSTKEVAQKAIEELHNKEFKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSPNFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPEKVTTEQLKELFRRHGEVTKVVMPPGKDGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQSDKKSDGGYGYSAGLHSNHLSHPGYGGFSGNLYGSLGAGYGAGAGAGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQMPPPRPPRRSDRSNGPGGQSGRGNDESSRRRYRPY 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1250 497 SUPERFAMILY RNA-binding domain, RBD 168 289 IPR035979 GO:0003676
Bisa10g1250 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 376 IPR000504 GO:0003723
Bisa10g1250 497 Gene3D - 287 411 IPR012677 -
Bisa10g1250 497 Gene3D - 240 285 IPR012677 -
Bisa10g1250 497 MobiDBLite consensus disorder prediction 456 497 - -
Bisa10g1250 497 SMART rrm1_1 300 372 IPR000504 GO:0003723
Bisa10g1250 497 SMART rrm1_1 172 246 IPR000504 GO:0003723
Bisa10g1250 497 MobiDBLite consensus disorder prediction 102 157 - -
Bisa10g1250 497 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 72 242 - -
Bisa10g1250 497 MobiDBLite consensus disorder prediction 87 101 - -
Bisa10g1250 497 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 75 463 - -
Bisa10g1250 497 SUPERFAMILY RNA-binding domain, RBD 241 374 IPR035979 GO:0003676
Bisa10g1250 497 MobiDBLite consensus disorder prediction 1 23 - -
Bisa10g1250 497 Gene3D - 75 239 IPR012677 -
Bisa10g1250 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 258 IPR000504 GO:0003723
Bisa10g1250 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 369 IPR000504 GO:0003723
Bisa10g1250 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 239 IPR000504 GO:0003723
Bisa10g1250 497 MobiDBLite consensus disorder prediction 87 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1250 Bisa-ChrBisa10 31597617 31606708 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1250 173 383 Eukaryotic Initiation Factors Gene Family AT1G22760 26.540 4.88e-13 69.7