Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1249 ATGTCAGAAGGTGCAGAAATTGATGAGAGGGTGGACCTTGATGAGGAAAATTACATGGAGGAGATGGATGATGATGTTGAAGAACAAATAGATGACGAATGTGTGGATGGGGGTGGTGACGAAAATCTTGAACGGAATGGTACTGAAGGACATGAAGATGCAGACTCAGCAGCAGAGGATGGCATGAAAGAACAAATGGCTGATGCAGATAGAAGTGACGATGTGCCTGAATCTATAGAGGATGAGCAAAAACCATCTTCCATTGATGAAGATGAGAAGAAGAAACATGATGAACTTATTTCCCTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTGAGGGAGTTGTGTGAACCAATGGGCGATATTCTTGAGGTGAGATTAATGAAAGATAGGGATACCGGAGAAGGCAAAGGTTATGCTTTTGTGGCATTTACGACAAAAGAGGTTGCGCAAAAGGCCATTGAAGAGCTACATGACAAGGAATTTAAGGGTAGATCCTTAAGGTGTTCACTGTCTGAAACAAAACACAGATTGTTCATTGGTAATGTCCCAAAAAGCTGGTCAGAGGATGAGTTTAAAAAAGTCATAGAGGGTGTTGGTCCTGGGGTTGAAAACATCGAGCTTATAAAGGACCTTCAAAATTCAAGCAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCGTGTGCTGATTATTCCCGGCAGAAGATGTCAAGTCCAAATTTCAGGCTGGATGGGAATACCCCAACTGTCACATGGGCTGATCCAAAAAATTCATCTGATCATTCTGCTTCCTCTGCTTCCTCTCAGGTTAAGGCTCTATATGTGAAAAATATACCTGAGAATGCTACTACTGAACAACTGAAGGAACTCTTCCGTCGGCATGGGGAAGTAACCAAAGTGGTTATGCCACCTGGCAAGGATGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCCAGTGCGATAAAGGCTGTAAAAGATACAGAAAAATATGAAATAGATGGCCAAGTGTTGGAAGTTGTTCTTGCAAAGCCTCAATCCGATAAGAAATCTGATGGAGGTTATGCCTACAATTCCGGGCTTCATTCGAACCATCTTGCACATCCAGGATATGGTAGTTTTTCAGGAAACCTATATGGCTCTTTAGGTGCTGGATATGGTACTGGTACTGGTTATCAACAGCCAGTGATATATGGTAGGGGACCAATGCCGGCTGGGATGCAGATGGTCCCGATGGTATTACCAGATGGTCGAATTGGCTATGTTCTTCAACAGCCTGGTGCACAAATGCCACCTCCACGCAGGAGTGATCGAACTAATGGTCCTAGTGGTCGTGGCAATGATGAGGGCAATCGTAGAAGATACCGACCTTATTAG 1428 0.4342 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDECVDGGGDENLERNGTEGHEDADSAAEDGMKEQMADADRSDDVPESIEDEQKPSSIDEDEKKKHDELISLPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGEGKGYAFVAFTTKEVAQKAIEELHDKEFKGRSLRCSLSETKHRLFIGNVPKSWSEDEFKKVIEGVGPGVENIELIKDLQNSSRNRGFAFVLYYNNACADYSRQKMSSPNFRLDGNTPTVTWADPKNSSDHSASSASSQVKALYVKNIPENATTEQLKELFRRHGEVTKVVMPPGKDGGKRDFGFIHYAERSSAIKAVKDTEKYEIDGQVLEVVLAKPQSDKKSDGGYAYNSGLHSNHLAHPGYGSFSGNLYGSLGAGYGTGTGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQMPPPRRSDRTNGPSGRGNDEGNRRRYRPY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1249 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 269 IPR000504 GO:0003723
Bisa10g1249 475 Gene3D - 270 395 IPR012677 -
Bisa10g1249 475 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 188 268 - -
Bisa10g1249 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Bisa10g1249 475 MobiDBLite consensus disorder prediction 8 38 - -
Bisa10g1249 475 Gene3D - 10 187 IPR012677 -
Bisa10g1249 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 251 IPR000504 GO:0003723
Bisa10g1249 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Bisa10g1249 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 355 IPR000504 GO:0003723
Bisa10g1249 475 CDD RRM_SF 109 181 - -
Bisa10g1249 475 Gene3D - 188 268 IPR012677 -
Bisa10g1249 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 417 - -
Bisa10g1249 475 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 187 - -
Bisa10g1249 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 362 IPR000504 GO:0003723
Bisa10g1249 475 MobiDBLite consensus disorder prediction 39 94 - -
Bisa10g1249 475 SUPERFAMILY RNA-binding domain, RBD 104 272 IPR035979 GO:0003676
Bisa10g1249 475 SUPERFAMILY RNA-binding domain, RBD 278 377 IPR035979 GO:0003676
Bisa10g1249 475 MobiDBLite consensus disorder prediction 1 94 - -
Bisa10g1249 475 MobiDBLite consensus disorder prediction 440 475 - -
Bisa10g1249 475 SMART rrm1_1 188 265 IPR000504 GO:0003723
Bisa10g1249 475 SMART rrm1_1 286 358 IPR000504 GO:0003723
Bisa10g1249 475 SMART rrm1_1 108 181 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1249 Bisa-ChrBisa10 31582443 31586844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1249 109 416 Eukaryotic Initiation Factors Gene Family AT1G71770 26.225 2.30e-18 86.3