Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1240 ATGGGACAGAATCCTACATGTGATTTGTTTGGTATGCATTTTAACAAAGGAACTCAATTTCCTAAAGCATTCAATTGTTGTATGGATTTGGGACTGTTTTTCTTTTCTTCTGTCTTGTCTCTGATTCTCACAATGTCTCATCAGAGGCAATTCCAGATGGTGGGTGGTATGACTATGAACAGTCCTGGGCATTACAATGACACAACCTTCACAAAAATCTTCGTTGGAGGGTTGGCTTGGGAGACTCAAAGGGACACAATGAAGAGGTATTTTGAGCAGTTTGGTGAGATCCTTGAGGCTGTTGTTATCTCAGACAAACAAACTGGGAGATCCAAAGGTTACGGCTTTGTTACATTTAAGGATCCAGAAGCAGCCATGAGAGCATGTCAGAATCCATCTCCAGTTATTGATGGTCGCAGAACAAACTGCAATCTTGCATCTCTTGGAGCAAACAAGAACCGCTCGCCAACTCCTCAATATGGCAACTTTGCTGGAGCAGAAAGGTCCAGTCCAGGAGATGGACAAATGGCAACACCTGCATATCATGGTCCTTCCTCTGCATTTTTTTACCAACCTTCTGGCCAGTTCACATTTCCTTATTCATCCTATGGGTATTCTGGATATTCACAAGACAACATGTGCCCCATGAACTATTGTGGAGTTTATGGAGGCCAACAATTTTCACCATACTATCCATCACCAAGTGGGCCATCTGGGCCAACAGGGTTGGTCCATAATATTTACCCTTTTTATACTCAATATGCACAAAGTAGACAGGCTCAAGATTTTGGAGTTCAATATCCCCAAATGGTACAATTCCCATTTCTGCCTCAACACTATGGCTCCACAGGCATCCTCTCTTTTCCTTCTTCAGTGCCAATCCCAACTGCTACTACTACTAGTGCAGCATTCAGCCGCGCAGCTAGTTGCAAGGAACAAGCATTCTCTGGTCTCTCTTCCTCAAGTGTAAAAATGTCGGTTGGAGAGCTTGCTTGCAGCTACGCGTCCATGATTCTTTTCGATGATGGCATTCCTATCACTGCCGAGAAGATCTCAACCGTGGTGAAATCCGCAAAGCTTGAAATTGAATCTTATTGGCCAAGCTTATTTGCTAAGCTTGCTGAAAAGCGAAGCATTGAGGATCTGATATTGAATGCTGGAGGTGGTGGGGCTCCAGTTGCTGTTGCTGCTCCAGCTGCCGCTGCTGGTGGTGCCGGAGCCGCTCCTGCGGCTGCTGCTCCTGCTGAGGAGAAGAAGAAGGAAGAACCCCAGGAAGAGAGTGATGATGACATGGGCTTCAGCTTGTTTGATTAG 1314 0.4543 MGQNPTCDLFGMHFNKGTQFPKAFNCCMDLGLFFFSSVLSLILTMSHQRQFQMVGGMTMNSPGHYNDTTFTKIFVGGLAWETQRDTMKRYFEQFGEILEAVVISDKQTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRTNCNLASLGANKNRSPTPQYGNFAGAERSSPGDGQMATPAYHGPSSAFFYQPSGQFTFPYSSYGYSGYSQDNMCPMNYCGVYGGQQFSPYYPSPSGPSGPTGLVHNIYPFYTQYAQSRQAQDFGVQYPQMVQFPFLPQHYGSTGILSFPSSVPIPTATTTSAAFSRAASCKEQAFSGLSSSSVKMSVGELACSYASMILFDDGIPITAEKISTVVKSAKLEIESYWPSLFAKLAEKRSIEDLILNAGGGGAPVAVAAPAAAAGGAGAAPAAAAPAEEKKKEEPQEESDDDMGFSLFD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1240 437 Hamap 50S ribosomal protein L12 [rpl12]. 330 437 IPR027534 GO:0003735|GO:0005840|GO:0006414
Bisa10g1240 437 Gene3D - 44 162 IPR012677 -
Bisa10g1240 437 CDD RRM_RBM24_RBM38_like 71 146 - -
Bisa10g1240 437 SMART rrm1_1 72 144 IPR000504 GO:0003723
Bisa10g1240 437 SUPERFAMILY RNA-binding domain, RBD 64 174 IPR035979 GO:0003676
Bisa10g1240 437 FunFam 60S acidic ribosomal protein P1 325 387 - -
Bisa10g1240 437 MobiDBLite consensus disorder prediction 407 437 - -
Bisa10g1240 437 Gene3D - 325 387 IPR038716 -
Bisa10g1240 437 PANTHER BOULE-RELATED 60 300 - -
Bisa10g1240 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Bisa10g1240 437 CDD Ribosomal_P1 329 385 - -
Bisa10g1240 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 130 IPR000504 GO:0003723
Bisa10g1240 437 Pfam 60s Acidic ribosomal protein 346 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1240 Bisa-ChrBisa10 31252936 31265921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1240 325 437 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 53.390 2.71e-34 122