Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1228 ATGAGTATAGAGACAAAGGTAGTGAGAAGAAGTGAAGGTCACTCTGGCGAAATCTGTGCATATTGGTTGGCTGGGAGATGCACCAAAAATCCTTGTAGGTTTCTGCACATAAAACCACCACGGGCACCAACTACTTTTCATTATGGAAGGCAGTCCCATTACTTTGCTGAGAAGACCCTTAAACATAATTCAAATAATGTATTGTTTAAGAAGAGTGATGGAGATGTGACAAGCTTCACTAAGGCTACTCAAAAGTCATCACAGCATATCTGTAGATACTGGATGAATGGCAATTGCATACACGGCGATAAGTGTTGGAACTTGCATTCTTGGTTTCACGGGGAGGGGTTTTCCACTCTAGCTAGCCTACATGAACACAAGAAGATTGTCACCGGGATTACACTTCCAGTTGGATCGGACAAACTCTTCTCTGGCAGCACTGATGGGACAGTTCAGATGTGGGACTGCTATACAGGTCAATGTTCTCATGTGATAAATCTTGGTGGTGAGGTCAGGTCTTTGATCAGTGAGGGCCCGTGGGTTTTTGTTGGCTTGCCGGATGCTGTTAGAACATCTGCTGAGTTGAATCTTGATGGACCTAAAGGGCAAGTCTTTGCCATGGCTGTTGGCAATGATACACTTTTTGCTGGGGCAAAGGATGGTGTTATATACGCATGGAGAGGCAGCTTTGAAACAACTTCATTTGTACCAGTGGCAACATTGAATGGCCACACTAGTGCTGTGATTTACCTAACTGTTGGACGCAATGTGTTGTACTCAGGCTCCATGGATGGTAGCATAAAGGCTTGGGACATTACCACATTACAGTGTACAATGACATTGGACGCACACAGTGATGCCGTGACATCCCTTATTTGTTGGGATGAGTATCTGCTATCAAGTTCATTGGATGGCACAGTTAAGGTTTGGGCTGGTACTGAAGCGAAACCTTTGGAAGTAATATATACACACAATGAAGAACATGGTGTTCTTGCACTTGGTGGGATGACTAATTCTGAAGGAAAACCTATTTTGATTTGCTCGTGTAACGACGATTTTGTGGGCCTCTATGAATTGCCATCATTTTCTGAGATGGGTCAGTTGTTCTCGAAACAAGAAGTTCGAACAATTGAAGTAGCTCTGGGTGGTCTCTTTTTCACAGGAGACGCGATTGGTTTGTTGACAGTTTGGAAGTGGTCAGAGCTAGAGCTGAAAACGGCATCTTCATGA 1230 0.4398 MSIETKVVRRSEGHSGEICAYWLAGRCTKNPCRFLHIKPPRAPTTFHYGRQSHYFAEKTLKHNSNNVLFKKSDGDVTSFTKATQKSSQHICRYWMNGNCIHGDKCWNLHSWFHGEGFSTLASLHEHKKIVTGITLPVGSDKLFSGSTDGTVQMWDCYTGQCSHVINLGGEVRSLISEGPWVFVGLPDAVRTSAELNLDGPKGQVFAMAVGNDTLFAGAKDGVIYAWRGSFETTSFVPVATLNGHTSAVIYLTVGRNVLYSGSMDGSIKAWDITTLQCTMTLDAHSDAVTSLICWDEYLLSSSLDGTVKVWAGTEAKPLEVIYTHNEEHGVLALGGMTNSEGKPILICSCNDDFVGLYELPSFSEMGQLFSKQEVRTIEVALGGLFFTGDAIGLLTVWKWSELELKTASS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1228 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 310 IPR001680 GO:0005515
Bisa10g1228 409 SUPERFAMILY WD40 repeat-like 105 404 IPR036322 GO:0005515
Bisa10g1228 409 Gene3D - 12 108 - -
Bisa10g1228 409 ProSiteProfiles Zinc finger C3H1-type profile. 18 39 IPR000571 GO:0046872
Bisa10g1228 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 155 - -
Bisa10g1228 409 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Bisa10g1228 409 PRINTS G protein beta WD-40 repeat signature 298 312 IPR020472 -
Bisa10g1228 409 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Bisa10g1228 409 Gene3D - 183 408 IPR015943 GO:0005515
Bisa10g1228 409 PANTHER - 47 406 IPR044715 -
Bisa10g1228 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 164 IPR001680 GO:0005515
Bisa10g1228 409 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Bisa10g1228 409 SMART c3hfinal6 14 38 IPR000571 GO:0046872
Bisa10g1228 409 Gene3D - 109 182 IPR015943 GO:0005515
Bisa10g1228 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 274 - -
Bisa10g1228 409 SMART WD40_4 234 271 IPR001680 GO:0005515
Bisa10g1228 409 SMART WD40_4 274 311 IPR001680 GO:0005515
Bisa10g1228 409 SMART WD40_4 190 227 IPR001680 GO:0005515
Bisa10g1228 409 SMART WD40_4 116 155 IPR001680 GO:0005515
Bisa10g1228 409 SMART WD40_4 361 398 IPR001680 GO:0005515
Bisa10g1228 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 280 IPR001680 GO:0005515
Bisa10g1228 409 Pfam WD domain, G-beta repeat 237 271 IPR001680 GO:0005515
Bisa10g1228 409 Pfam WD domain, G-beta repeat 276 310 IPR001680 GO:0005515
Bisa10g1228 409 Pfam WD domain, G-beta repeat 119 155 IPR001680 GO:0005515
Bisa10g1228 409 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
Bisa10g1228 409 ProSitePatterns Trp-Asp (WD) repeats signature. 258 272 IPR019775 -
Bisa10g1228 409 SUPERFAMILY CCCH zinc finger 86 110 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1228 Bisa-ChrBisa10 31047441 31050692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1228 197 321 Acyl Lipid Metabolism Gene Families AT3G18860 33.846 8.96e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa10g1228 WD40 0.0038 CL0186