Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1222 ATGGGTGAACAGAAGCAACATAGCATGCCAGCTCTGCCATGGATGCGAGACCCTGTTGATGTCACTCTATCAGAAGATTGTCCTCTTGATAGTGTTCCTTGCCTTGATCCCAGGTTGAAGTTGGCATTGCAAAATATGGGCATCTCTAAGCTCTTCCCTGTGCAAGTTGCAGTTTGGCAAGAGACAATTGGACCCAGTAATTTTGAGCGAGACCTTTGCATAAATTCTCCCACTGGAAGTGGAAAAACTTTAGCTTATGCTCTGCCAATAGTGCAAATGCTGTCAACCCGAGTGGTAAAATGCCTGAGAGCTTTAGTGGTGGTGCCCACTCGTGATTTGGCCTTACAGGTTAAGGAAGTTTTTGATGCTATTGCATCTCCACTAGGTTTACATGTTGGCTTGGCTGTTGGTCAATCTTCAATATCTGATGAAATTTCTAAGCTTGTGAGTATACCAGGATATGGGACAGGAATGTGTTATGATCCAGAAGATACTTCACTTCGTTTTCAGCTTGGCTTCCAAAGTAAGGTTGATATATTAGTAGCAACCCCTGGAAGGCTAATGGACCATATTAATACCACTAAAGGATTCACACTTGAGCATCTTTATTACCTTGTGGTTGATGAAACAGATCGACTTCTTCGGGAGGCCTACCAGTCTTGGTTACCTACTGTGCTGGAACTAACTCGATCTAAGGATGAGGATGGTTATCCACCAGATGGTTCTTTTCTTCCTTATTCTTTTGGTACCTTAAGAACTAGAAGGAGATGTGGCGTTGAGAGGGGATTCAAAGATAAACCTTACCCTAGGTTGGCAAAGATGGTTCTATCTGCTACAGTAACCCAGGACCCAGGCAAGCTTGTTCAACTTAGTCTACATCACCCAATATTTTTGAAAGCTGGGCAAATGCGTTATAGGCTTCCAGAAAATTTGGAATCATTTAAACTGATTTGTGAAAACAAGGTCAAACCCCTGTATTTGGCTGCCCTTTTAAAAACATTGGGAGGAGAAAAATGCATAGTTTTTACGAAATCTGTGGATTCGACACATCGTCTGTGCAAATTACTGAATTATTTTAGTGATCTTCAAATTAAGATCAGGCAGTATTCTAGTCTTCAACGTCAACATGTACGAAGTAAGACATTGAAGGAATTTCGAAAAGGGGGGTTTCAAGTGCTTGTGTCTTCTGATGCAATGACTCGCGGAATGGATGTTAAAGGGGTGAGAAATGTCATTAATTATGACATGCCCAAATACATAAAAACTTACGTTCATCGGGCTGGTAGAACAGCAAGAGCTGGTCAAATTGGGCGTTGCTTCACATTGATGAGCAAAGATGAGGTTCGACGATTCAAGAAGTTGTTGCAAAAGGTTGATAACAGGGCTTGCTGTGATCATATTGTTTCCTCCGATGTGATTGAAGCACTTCAGCCTACTTACCAATCAGCACTGAAAAAATTTAAAGAGGCAGTTTTGGAAGCTCAAAAGAAACCCAATAGCAGTTCAGAGACTTCTCATACGAAGAATGAAAAAGAGCATGTAAGGGATTAG 1551 0.4152 MGEQKQHSMPALPWMRDPVDVTLSEDCPLDSVPCLDPRLKLALQNMGISKLFPVQVAVWQETIGPSNFERDLCINSPTGSGKTLAYALPIVQMLSTRVVKCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSISDEISKLVSIPGYGTGMCYDPEDTSLRFQLGFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSKDEDGYPPDGSFLPYSFGTLRTRRRCGVERGFKDKPYPRLAKMVLSATVTQDPGKLVQLSLHHPIFLKAGQMRYRLPENLESFKLICENKVKPLYLAALLKTLGGEKCIVFTKSVDSTHRLCKLLNYFSDLQIKIRQYSSLQRQHVRSKTLKEFRKGGFQVLVSSDAMTRGMDVKGVRNVINYDMPKYIKTYVHRAGRTARAGQIGRCFTLMSKDEVRRFKKLLQKVDNRACCDHIVSSDVIEALQPTYQSALKKFKEAVLEAQKKPNSSSETSHTKNEKEHVRD 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1222 516 Pfam Helicase conserved C-terminal domain 323 434 IPR001650 -
Bisa10g1222 516 Pfam DEAD/DEAH box helicase 53 286 IPR011545 GO:0003676|GO:0005524
Bisa10g1222 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 456 IPR027417 -
Bisa10g1222 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 473 IPR001650 -
Bisa10g1222 516 Gene3D - 309 515 IPR027417 -
Bisa10g1222 516 PANTHER RNA HELICASE 35 495 - -
Bisa10g1222 516 CDD DEADc_DDX51 39 295 - -
Bisa10g1222 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 298 IPR014001 -
Bisa10g1222 516 SMART helicmild6 350 434 IPR001650 -
Bisa10g1222 516 CDD SF2_C_DEAD 311 442 - -
Bisa10g1222 516 SMART ultradead3 47 314 IPR014001 -
Bisa10g1222 516 MobiDBLite consensus disorder prediction 494 516 - -
Bisa10g1222 516 Gene3D - 22 301 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1222 Bisa-ChrBisa10 30951677 30960470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1222 57 449 Eukaryotic Initiation Factors Gene Family AT3G13920 23.940 2.03e-27 112