LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa10g1201	ATGGCTGGATCTGAAACTACAAAATATGCTCATGCAACTACATCCCCTCCAACATCATCTACCAATACTAATCCGCCAATCCAATCCAACCATAAACCCACAATAATCAAACGATTCATTGGAGTCCGCCAGAGGCCGTCTGGCCGGTGGGTTGCCGAGATCAAGGACTCATCCCAGCATGTCCGACTATGGCTTGGCACCTATGACACCCCAGAGGAGGCGGCTCAGGCCTATGACGAGGCAGCCCGAGCCCTACGCGGGGACAACGCCCGTACCAATTTTGTCACTACCAACACCACCAACAATCCTTCAAACGAAGGGCTATCCAAGCAAAGTGGGTTGAGTTTCGCTTCTTTGAAGGCCAAGTTGAGCAAGAACCTCCAAAGCATCATGGCCAGGGCTAGCGATGGCAGTAATGGTAATAAGGCGTCCAAGAGTAGGGTAAGTGACCATTTTACCCTTGCTAGTATATTCCAAAGGAGAACTAGCACTAACTACGGACAATACAACAACCAAATAATCCCTAATAGTGTAATAATGGAGAAAGTGGTGCAGCCTAGTATAATAGTCCCGCCTGTAGTGAATCATCATCATCAACAGGGTGTAACAAGTTCATGGGAGAGCTCTAGTGTATCGGATTGTAGCTCAGAGTGGGTCGGATTTCGGGGAGCCGGGTTGGATTCAGACGGTTCGGATGTGGGGGAGAAGGGGTATAATTTGGAGCAATTGATGGGGTGGGTGGGTAGTCCGGACCATGGTGTTTATAATAATGGAAGTAGTGGTATAATTAATGGAAGTGATATTATTCATGAAGAAGGATCAAGGAGTAAGAGGTTTAAGGTTTCTTCTTCAGTGCTTGTCCCTCCAACTTTCAGTGGGTCTCCATATAATAATGATCATTGTGGGTCTCCATATAGTAATTATTGTGGGTCTCCATTCAGTGCATATGGATCTCCATATAACAATGGTGGGAAGTGA	978	0.4663	MAGSETTKYAHATTSPPTSSTNTNPPIQSNHKPTIIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARALRGDNARTNFVTTNTTNNPSNEGLSKQSGLSFASLKAKLSKNLQSIMARASDGSNGNKASKSRVSDHFTLASIFQRRTSTNYGQYNNQIIPNSVIMEKVVQPSIIVPPVVNHHHQQGVTSSWESSSVSDCSSEWVGFRGAGLDSDGSDVGEKGYNLEQLMGWVGSPDHGVYNNGSSGIINGSDIIHEEGSRSKRFKVSSSVLVPPTFSGSPYNNDHCGSPYSNYCGSPFSAYGSPYNNGGK	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa10g1201	325	ProSiteProfiles	AP2/ERF domain profile.	38	95	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1201	325	SMART	rav1_2	38	101	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1201	325	MobiDBLite	consensus disorder prediction	1	31	-	-
	Bisa10g1201	325	MobiDBLite	consensus disorder prediction	1	33	-	-
	Bisa10g1201	325	FunFam	ethylene-responsive transcription factor RAP2-11	37	96	-	-
	Bisa10g1201	325	PRINTS	Ethylene responsive element binding protein signature	61	77	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1201	325	PRINTS	Ethylene responsive element binding protein signature	39	50	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1201	325	Pfam	AP2 domain	38	87	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1201	325	CDD	AP2	37	91	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1201	325	SUPERFAMILY	DNA-binding domain	38	95	IPR016177	GO:0003677
	Bisa10g1201	325	Gene3D	AP2/ERF domain	37	96	IPR036955	GO:0003700\|GO:0006355
	Bisa10g1201	325	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	28	155	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa10g1201	Bisa-ChrBisa10	30063701	30064678	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa10g1201	38	94	AP2-EREBP Transcription Factor Family	AT5G19790	71.930	1.09e-24	99.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa10g1201		AP2	6.9e-15	CL0081