Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1195 ATGGCTCAAACTCGTTTGCGTCAGTCAAAGTTATTGTCGTGCCATTCATTGGACCTCTGCATGTTGTGGTATGCATCAGTTGATGTCGAAGGCTTGAAGCTATGTGTGTTGTGTAGTTGTTTGAAGTTTGGTCACCGGTGTGTGGGCTTAAGGTTCCAAGATTGTGCAAGGAAAATTGGCAAAGTTGTTGAAGAGTTTGCTGCTTCCAATTTGCCAGAAATGAAGCCCGTCTTTTGTGGAAACCTGGATTTCGATGCACGCCAGTCTGATGTTGAGAGACTCTTCAGAAGATATGGGAAAGTTGATAGAGTGGACTTGAAGTCCGGGTTTGCTTTTGTATACATGGAGGATGAACGTGATGCCGAGTATGCAATTAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGAATACGTGTGGAGTGGACTAAGCAAGAACGTGATAGCAGAAGGTCAGGTGACACAAAAAGATCTTCAACTAATATGAGACCGTCAAAGACATTGTTTGTCATAAATTTTGATCCAGTTCATACCAGGACGAGGGATATAGAGAGGCACTTTGATCCCTACGGTAAAATATTGAATATAAGGATAAGAAGGAATTTTGCTTTTGTTCAGTATGAATCCCTGGAGGATGCTACAAGAGCATTGGAGACGACTAACATGAGCAAGTTATTGGATCGGGTTATAACAGTGGAGTATGCAATTAGAGATGATGATGATGATAGAAGAAACGGATATAGTCCTGATAGAAGAGGCCGTGACATCTCCCCTGATGGGAGATATGGTCGTGGGAGATCTCCTAGTCCATATCGCAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCGACTTCCAGACCAGAACCAAGAGGAAGTCCCAAATATGAACGCAACAAAAGCCCATCAAATGGGAGATATGACAGTCGATCGCCCCCACCCCGCCACAGATCTCGTTCCCCAGGAGAAGTTGAATAG 990 0.4444 MAQTRLRQSKLLSCHSLDLCMLWYASVDVEGLKLCVLCSCLKFGHRCVGLRFQDCARKIGKVVEEFAASNLPEMKPVFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDTKRSSTNMRPSKTLFVINFDPVHTRTRDIERHFDPYGKILNIRIRRNFAFVQYESLEDATRALETTNMSKLLDRVITVEYAIRDDDDDRRNGYSPDRRGRDISPDGRYGRGRSPSPYRRGRGSPDYGHGSNPTSRPEPRGSPKYERNKSPSNGRYDSRSPPPRHRSRSPGEVE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1195 329 MobiDBLite consensus disorder prediction 295 329 - -
Bisa10g1195 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 239 IPR000504 GO:0003723
Bisa10g1195 329 SUPERFAMILY RNA-binding domain, RBD 75 242 IPR035979 GO:0003676
Bisa10g1195 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 147 IPR000504 GO:0003723
Bisa10g1195 329 Gene3D - 162 248 IPR012677 -
Bisa10g1195 329 FunFam Serine/arginine-rich splicing factor RS31 74 158 - -
Bisa10g1195 329 MobiDBLite consensus disorder prediction 241 329 - -
Bisa10g1195 329 FunFam Serine/arginine-rich splicing factor RS31 160 251 - -
Bisa10g1195 329 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 169 317 - -
Bisa10g1195 329 MobiDBLite consensus disorder prediction 241 263 - -
Bisa10g1195 329 CDD RRM1_AtRSp31_like 75 146 - -
Bisa10g1195 329 Gene3D - 68 161 IPR012677 -
Bisa10g1195 329 SMART rrm1_1 169 235 IPR000504 GO:0003723
Bisa10g1195 329 SMART rrm1_1 76 143 IPR000504 GO:0003723
Bisa10g1195 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 232 IPR000504 GO:0003723
Bisa10g1195 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 136 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1195 Bisa-ChrBisa10 29897020 29906890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1195 77 234 Eukaryotic Initiation Factors Gene Family AT4G34110 25.434 1.30e-08 54.3