Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1175 ATGTCTATACTCTATACCATCGCCGAACTGATTCTGAGCATGAGAAACTGCTATTCTCATAGAGCCTCGAGAGACTACTTACTGCTCACTTCTGAATCTGTTCATAAATTGCTGAAGAAGAAGAAAAAGAGAGATAGTGTGTTGGGTTGTCAAACGGATATAGATGGGCAAAGGGATAGGAATAGAATGCCTGAAAATTATGAACCAAATGTTAACGGGAGAAGAAGTAGAGAAGAGGAGCACGAAAGCAGATCTGGCAGCGACAACATGGAAGGTGCTTCCGGCGACGATCAAGACGGCTCCGACCTCCCTCCCAGGAAGAAGCGCTATCACCGACACACTCCTCAACAAATACAAGAGCTCGAATCTTTGTTCAAGGAGTGTCCTCACCCGGATGAGAAACAGAGATTGGAACTGAGCAAAAGGCTTTGTTTGGAAACTAGGCAAGTGAAATTCTGGTTCCAAAATCGAAGAACTCAGATGAAGACCCAATTGGAACGCCATGAGAACACGCTGCTTAGGCAAGAGAACGACAAGCTTAGGGCGGAGAACATGTCCTTTAGAGACGCCATGAGGAACCCCATTTGCTCCAACTGTGGAGGACCAGCTATACTCGGAGAAATTTCACTGGAGGAGCAGCATCTCCGGATCGAGAACGCCCGCTTGAAGGATGAGCTAGACCGGGTTTGCGCGCTGGCAGGCAAGTTTCTGGGCCGGCCCATTTCCTCATTTGCTAACTCAATGGCTCCTCCATTGGCTAACTCAAGTTTAGAGCTCGGAGTAGGGACCAATGGCTATGGAGGAATCAGCAGTGTGCCTGCAACGTTACCGTTGGGTCCTGATTTGGGTGTGGGGATCTCTGGCCCTTTAGGCATGGTGACTCCTCAATCTCCCCCTCCTCCGGCCAGACGAACCGGGGCGGCAGTGGGAGGCCTGGATAGATCGATGGAGAGGTCTATGTTTCTAGAGCTTGCTTTGGCTGCCATGGATGAATTGGTGAAGATGGCTCAGAGTGATGAGCCTCTTTGGATGAGGAGCTTAGAAGGGGGAAGAGATATCATCAACCATGAGGAGTACCTCAGAACTTTTACTCCTTGCATTGGCGTGAAACCCAGCGGCTTTGTCTCTGAGGCTTCTAGGGAGACTGGGATGGTCATCATAAACAGCTTGGCCCTTGTTGAAACTCTCATGGACTCGAATCGTTGGTCTGAGATGTTTCCTTGTATGATAGCAAGAGCCTCCACCACAGAAGTGATATCCTGTGGGATAAATGGAACCAGAAACGGTGCACTTCAACTAGTGCATGCTGAACTGCAAGTGCTTTCGCCGTTGGTTCCGGTTCGAGAGGTGAATTTCCTGCGGTTCTGTAAGCAGCACGCAGATGGGGTGTGGGCAGTGGTGGACGTTTCCATTGATACTATTCGAGAGGCTTCTGGTGTGAACTGTAGGAGGCTCCCTTCTGGCTGCGTGGTGCAAGACATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCAGAATACGATGAAAGCCAAGTTCATCAGCTATACAGGCCCTTGTTGAGCTCAGGCATGGGATTTGGCGCGCAACGCTGGGTCGCCACCCTCCAACGCCAATGCGAAGGCCTTGCCATCTTAATGTCTTCTTCGGTTACTTCACGTGATCATTCTGCGATCACCGCCGGCGGACGGCGGAGCATGCTAAAGCTGGCGCAGCGCATGACCAACAATTTCTGTGCTGGCGTCTGTGCCTCCACTGTGCATAAGTGGAACAAGCTGAATGCTGGCAACGTGGACGAGGACGTCCGCGTGATGACACGGAAGAGCGTTGACGATCCCGGCGAGCCGCCGGGGATCGTGCTGAGCGCCGCCACGTCGGTGTGGCTGCCGGTGTCGCCGCAGCGATTGTTCGATTTCCTCCGCAACGAACGTCTCCGAAGCGAGTGGGACATACTCTCGAATGGTGGGCCCATGCAGGAGATGGCCCATATCGCTAAGGGTCAAGACCACGGCAATTGCGTCTCCCTCCTCCGAGCCAGCGCTATGAATGCGAACCAGAGTAGCATGCTGATATTGCAAGAGACTTGCATAGACGCAGCGGGGTCGCTTGTAGTGTACGCGCCAGTGGATATCCCAGCCATGCACTTGGTGATGAACGGTGGCGATTCAGCTTACGTGGCTTTACTTCCGTCGGGGTTTTCGATTGTGCCAGATGGGCCTGGGTCGCGTGGGTCTCAAACGTCGGTGAGCAACGGCACTGGCGGAAGGGTTAGTGGATCGCTTCTTACTGTGGCGTTTCAGATTCTCGTGAATAGTCTCCCGACGGCGAAGCTGACGGTGGAGTCGGTGGAGACGGTGAACAATCTCATTTCGTGCACGGTTCAGAAGATAAAGGCTGCACTTCATTGTGAAAGCTGA 2421 0.525 MSILYTIAELILSMRNCYSHRASRDYLLLTSESVHKLLKKKKKRDSVLGCQTDIDGQRDRNRMPENYEPNVNGRRSREEEHESRSGSDNMEGASGDDQDGSDLPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSFRDAMRNPICSNCGGPAILGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSFANSMAPPLANSSLELGVGTNGYGGISSVPATLPLGPDLGVGISGPLGMVTPQSPPPPARRTGAAVGGLDRSMERSMFLELALAAMDELVKMAQSDEPLWMRSLEGGRDIINHEEYLRTFTPCIGVKPSGFVSEASRETGMVIINSLALVETLMDSNRWSEMFPCMIARASTTEVISCGINGTRNGALQLVHAELQVLSPLVPVREVNFLRFCKQHADGVWAVVDVSIDTIREASGVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGMGFGAQRWVATLQRQCEGLAILMSSSVTSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRNERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHLVMNGGDSAYVALLPSGFSIVPDGPGSRGSQTSVSNGTGGRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1175 806 SMART HOX_1 105 168 IPR001356 GO:0003677
Bisa10g1175 806 SUPERFAMILY Bet v1-like 315 543 - -
Bisa10g1175 806 Pfam START domain 323 542 IPR002913 GO:0008289
Bisa10g1175 806 SUPERFAMILY Bet v1-like 571 799 - -
Bisa10g1175 806 FunFam Homeobox-leucine zipper protein GLABRA 2 323 542 - -
Bisa10g1175 806 SUPERFAMILY Homeodomain-like 90 164 IPR009057 -
Bisa10g1175 806 Coils Coil 158 185 - -
Bisa10g1175 806 SMART START_1 323 543 IPR002913 GO:0008289
Bisa10g1175 806 Gene3D - 378 540 IPR023393 -
Bisa10g1175 806 ProSiteProfiles START domain profile. 314 546 IPR002913 GO:0008289
Bisa10g1175 806 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 106 803 IPR042160 -
Bisa10g1175 806 CDD START_ArGLABRA2_like 318 542 - -
Bisa10g1175 806 MobiDBLite consensus disorder prediction 48 114 - -
Bisa10g1175 806 MobiDBLite consensus disorder prediction 48 87 - -
Bisa10g1175 806 CDD homeodomain 106 164 IPR001356 GO:0003677
Bisa10g1175 806 Pfam Homeodomain 107 162 IPR001356 GO:0003677
Bisa10g1175 806 Gene3D - 94 180 - -
Bisa10g1175 806 FunFam Homeobox-leucine zipper protein HDG1 94 180 - -
Bisa10g1175 806 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Bisa10g1175 806 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1175 Bisa-ChrBisa10 29284385 29290120 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1175 48 806 Homeobox Transcription Factor Family AT3G61150 68.766 0.0 1034
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa10g1175 START 7.3e-57 CL0209