Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1170 ATGTTTAGCACAGGCTCGTTACCTTCTTCTCTGCCCGATGCTTCCGTCGACCCCTCGCCGCTCCTCCACTACTCCGTCTCTGACCAGATAGTCCGGAGCCACCGCGTCCTCCGGCGTACTTTGCCGCCGTTACGGAGAGCGGCGCGGTTCTTCCGGAGAGCGAGCGGGAGGCGGATGATGCTGCGGGAGCCGTCGGTGCTGGTGCGGGAGAACGCGGCGGAGCAGCTGGAGGCGCGTCAGAGCACCTGGGCGTACTCGAAGCCCGTGGTGATACTGGATGTCGTTTGGAACATGGCGTCTGTGACGATTGGGATTGTCGTTTTGGGACTGAGCATGGACGAAAAGCCTTCGGTGCCTTTGAGGGTGTGGGTGTGTGGGTGTTTGGTTGAGGGCCTGTTTCACTGCGTGCGGGTGATTGTGAATTACCAACGACGACGCAGGGAAGCGGAAGCAAACTTTGCGTTGTTGGAACAGAATCAAAATGAGAACGAGAATAGTAATGGAAATGAGAATAGAAGATGGGAAAGAGTTGGTGATTTGAGTTCGAGTTCTGGGAGTGACACACAGGATTCTCGTGAAGGGCACACCCAGGAACGTGAAGGATGCAGAATCAGGAAGTTCATAGAATCAGTGATCGCTATGCTTTCTTTCTTATGGTGGCTTCTTGGGTTCTACTGGGTAACTACTGGTGGCCAGAGCTTGACCCAGGATTCTCCTAAACTATACTGGCTTTGTATCACCTTCCTTGCTTTCGAAATAGCAGTTGTTTTTATTTGTGTTGCTGTCGCCTGTCTTGTCGGTATTGCTGTTTGCTGCTGTCTGCCATGCATACTTGCTCTTTTGTCCCTGGTGACAACTCAGGATGGGGCAACCAAGGAAGAAATCAATCAGTTGCCAAAATACAAGTTCCGGAGGGTGGATGAAAAAGAGAATGGCAATGTCCAAGATTCTTGTACCAAAGGAGTAATGACAGAATGTGACAGCGATACACCTGCAGAACATTTTCTTTCCATGGAAGATGCAGAGTGCTGTATATGCCTGTCTGCCTATGAAGATGGTGTTGAACTCAGAGAGCTTCCTTGTAACCACCATTTCCACATTGACTGCATCGACAAGTGGTTGCACATCAATGCTACTTGTCCTCTCTGCAAGTATAACGTTCTGATAGCTGGAAAATGTCCTGAAGAAGTTTGA 1194 0.5042 MFSTGSLPSSLPDASVDPSPLLHYSVSDQIVRSHRVLRRTLPPLRRAARFFRRASGRRMMLREPSVLVRENAAEQLEARQSTWAYSKPVVILDVVWNMASVTIGIVVLGLSMDEKPSVPLRVWVCGCLVEGLFHCVRVIVNYQRRRREAEANFALLEQNQNENENSNGNENRRWERVGDLSSSSGSDTQDSREGHTQEREGCRIRKFIESVIAMLSFLWWLLGFYWVTTGGQSLTQDSPKLYWLCITFLAFEIAVVFICVAVACLVGIAVCCCLPCILALLSLVTTQDGATKEEINQLPKYKFRRVDEKENGNVQDSCTKGVMTECDSDTPAEHFLSMEDAECCICLSAYEDGVELRELPCNHHFHIDCIDKWLHINATCPLCKYNVLIAGKCPEEV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1170 397 CDD RING-H2_EL5-like 342 383 - -
Bisa10g1170 397 Pfam Ring finger domain 342 384 IPR001841 -
Bisa10g1170 397 SUPERFAMILY RING/U-box 334 389 - -
Bisa10g1170 397 MobiDBLite consensus disorder prediction 178 197 - -
Bisa10g1170 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 389 IPR013083 -
Bisa10g1170 397 SMART ring_2 343 383 IPR001841 -
Bisa10g1170 397 PANTHER TARGET OF ERK KINASE MPK-1 54 387 - -
Bisa10g1170 397 ProSiteProfiles Zinc finger RING-type profile. 343 384 IPR001841 -
Bisa10g1170 397 Coils Coil 139 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1170 Bisa-ChrBisa10 29074943 29079971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1170 27 388 C3H Transcription Factor Family AT1G68070 42.424 1.35e-96 290