Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0860 ATGGGAAGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATCAATCGCCAAGTGACATTCTCAAAGCGAAGAAACGGTTTGCTGAAGAAAGCCTACGAACTCTCAGTCCTCTGCGATGCTGAAGTTGCCCTCATCATCTTCTCTGGTCGTGGCAAGCTCTACGAATTCGGAAGTGCTGGTATTACCAAAACCCTTGAACGATACCAGAGGTGCTCCTTTACTCCTCAAGACACCAATTTTGTTGAACTCGAAACTCAGAGTTGGTGCCAAGAGGTTTCGAAGCTAAAGGCAAAGTATGAGTCTCTTCAGAGGACTCAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAATGTAAAAGAGCTTCAAAATCTCGAGAAACAGCTTGAAGGAGCTCTAGCTCAAGCTAGGCAAAGGAAGACACAAATTATGATTGAACAAATGGAAGATCTTCGCAGAAAGGAACGCCATCTTGGAGACATTAATAAGCAACTCAGGCTTAAGCTTGAAGCAGAAGGATATAATCTAAAAGCAATAGAAAGCTTGTGGAGTTCAAATTCAACAGCTGGGGATACCACCTTCCCCATGCATCCTTCTCAAACCAACCCTATGGACTGCCAACCTGAACCTTTTTTGCAAATAGGGTACCATCAGTATGTTCAAGCTGAGACATCTAATGTTTCAAAGAGCATGGGTGGTGAAACTAACTTCATGCAGGGATGGGTTCTTTGA 735 0.4381 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGITKTLERYQRCSFTPQDTNFVELETQSWCQEVSKLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALAQARQRKTQIMIEQMEDLRRKERHLGDINKQLRLKLEAEGYNLKAIESLWSSNSTAGDTTFPMHPSQTNPMDCQPEPFLQIGYHQYVQAETSNVSKSMGGETNFMQGWVL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0860 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa10g0860 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa10g0860 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa10g0860 244 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bisa10g0860 244 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa10g0860 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Bisa10g0860 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa10g0860 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa10g0860 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa10g0860 244 FunFam MADS-box transcription factor 1 13 88 - -
Bisa10g0860 244 Coils Coil 120 143 - -
Bisa10g0860 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa10g0860 244 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa10g0860 244 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Bisa10g0860 244 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0860 Bisa-ChrBisa10 20068354 20075069 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0860 1 244 MADS-box Gene Family AT2G45650 69.444 2.69e-122 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa10g0860 K-box 2.4e-31 No_clan