Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0858 ATGGTGAGAGGGAAGACTCAGTTGAGGCGTATAGAGAACGCCACAAGCAGGCAAGTGACCTTCTCAAAGCGTCGTAATGGCCTGCTGAAGAAGGCCTTTGAACTATCAGTGCTTTGCGATGCTGAGGTTGCCCTCATCATCTTCTCCCCCAGAGGCAAGCTCTACGAATTTGCAAGCTCCAGCTTGCAGGAGACAATTGAACGATACCGCAGGCATACCAAGGATACTCAAACGGTCAGCAAATCACTTGAACAAAATGTGCAGCAGTTGAAGCTAGAAGCAGCAAGCATGATGAAGAAAATTGAACATCTTGAAATTTCAAAACGGAAACTCTTGGGAGAAGGTTTAGGGTCATGCTCCATAGAAGAGTTGCTACAGATAGAACAGCAATTGGAGAAGAGTGTAAGCAGCATTCGAGCAAGAAAGACTCAGGTTTACAGGGAACAAATTGAGCAACTAAAAGCAAAGGAAAAATCTTTAGAAGCTGAAAATGCAAGGCTCTCCGAGAAGTGTGGTATGCGGCAGCAGCAAGCGAGAAATGGTGAGCAGAGAGAGAGCCAAGGCAATGCAGAGAGTAGTAGTCCAAGTTCAGATGTGGAGACTGAGTTGTTCATTGGACTCCCAGAGACGAGAACAAGACGCATTCTTCCTCCTCTTCCGCCAAGGGTCTAA 672 0.4658 MVRGKTQLRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSLQETIERYRRHTKDTQTVSKSLEQNVQQLKLEAASMMKKIEHLEISKRKLLGEGLGSCSIEELLQIEQQLEKSVSSIRARKTQVYREQIEQLKAKEKSLEAENARLSEKCGMRQQQARNGEQRESQGNAESSSPSSDVETELFIGLPETRTRRILPPLPPRV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0858 223 Coils Coil 121 141 - -
Bisa10g0858 223 Coils Coil 80 107 - -
Bisa10g0858 223 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Bisa10g0858 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa10g0858 223 MobiDBLite consensus disorder prediction 167 223 - -
Bisa10g0858 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa10g0858 223 Coils Coil 143 170 - -
Bisa10g0858 223 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Bisa10g0858 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Bisa10g0858 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa10g0858 223 MobiDBLite consensus disorder prediction 170 200 - -
Bisa10g0858 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa10g0858 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa10g0858 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa10g0858 223 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa10g0858 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa10g0858 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa10g0858 223 FunFam MADS-box protein SOC1 14 95 - -
Bisa10g0858 223 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0858 Bisa-ChrBisa10 20029642 20048366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0858 1 158 MADS-box Gene Family AT2G45660 79.114 6.49e-87 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa10g0858 K-box 1e-26 No_clan