Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0853 ATGGAGACAAAGGCAGTGAGAAGATCTGAAGGTCCCTACGGAGAAATCTGCGCATATTGGCTGGCTGGGAGATGCACCAGAAACCCTTGTAGGTTTCTGCACAGAAAACCACCAACTACTTTTCATTATGGAAGGCAGTCCCATTACTTTGCTGAGAAGACACCCAAGTATAGTTCAAATAATGTATCAAGTAAGAAGAGTGAAGGAGATGTGACAAGCTCCTCTAAGGCTACTCAGAAGTCATCACAGAGTATCTGTAGATACTGGATGAATGGCAATTGCATACATGGTGATAAGTGCTGGAACTTGCATTCTTGGTTTTGCGGGGAGGGGTTTTCAACGCTAGCTAAGTTACATGAACACAAGAAGATTGTCACTGGGATTGCATTACCAGTTGGATCGGACAAGCTTTTCTCTGGCAGCACTGATGGGACAGTTCGGATGTGGGACTGCCATACAGGTCAATGTTCTCATGTGATAAATCTTGGTGGTGAAGTTAGGTGTTTGATCAGTGAGGGTCCATGGGTTTTTGTTGGTTTGCCGAATGCCGTTAGAGCCTGGAACATTCAGACATCTGCTGAGTTGAATCTCGAAGGACCTAAGGGGCAAGTTTTTTCCATTGCTGCTGGCAACGACACACTTTTTGCTGGAGCAAAGGATGGTGTTATATATGCATGGAGAGGCAATTTTGACACAACGTCTTCATTTGAACCAGTGGCAACATTGAATGGCCACACTAGTGCGGTGATTTGCCTAACTGTTGGGCGCAATGTGCTCTACTCAGGTTCCATGGATGGTAGCATTAAGGCTTGGGACATTACCACATTACAATGTACAATGACACTGGATGTACACACTGATGTCGTGACATCCCTTATTTGTTGGGATGAGTATCTGCTATCAAGTTCATTAGATGGCACAGTTAAGGTCTGGGCTGCCACTGAAGCGGGACCTTTGGCAGTAATATATACACACATTGAAGAACATGGCGTTCTTGCACTTGGTGGGATGACTGATTTTGAAGGGAAACCCATTTTGATTTGCTCGCGTAATGACAATTCTGTGGCCCTCTATGAATTGCCATCATTTTCTGCGAGGGGTCGATTATTCTCGAAACAAGAAGTTCGAACAATTGAAGTAGCTCCTGGTGGTCTATTTTTCACAGGAGACGCGACTGGTTTGTTGACAGTTTGGAAGTGGTCAGAGGTGGAGCAGAAGCTAGCCTCTTCATGA 1233 0.4509 METKAVRRSEGPYGEICAYWLAGRCTRNPCRFLHRKPPTTFHYGRQSHYFAEKTPKYSSNNVSSKKSEGDVTSSSKATQKSSQSICRYWMNGNCIHGDKCWNLHSWFCGEGFSTLAKLHEHKKIVTGIALPVGSDKLFSGSTDGTVRMWDCHTGQCSHVINLGGEVRCLISEGPWVFVGLPNAVRAWNIQTSAELNLEGPKGQVFSIAAGNDTLFAGAKDGVIYAWRGNFDTTSSFEPVATLNGHTSAVICLTVGRNVLYSGSMDGSIKAWDITTLQCTMTLDVHTDVVTSLICWDEYLLSSSLDGTVKVWAATEAGPLAVIYTHIEEHGVLALGGMTDFEGKPILICSRNDNSVALYELPSFSARGRLFSKQEVRTIEVAPGGLFFTGDATGLLTVWKWSEVEQKLASS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0853 410 ProSitePatterns Trp-Asp (WD) repeats signature. 259 273 IPR019775 -
Bisa10g0853 410 Gene3D - 178 409 IPR015943 GO:0005515
Bisa10g0853 410 PANTHER - 42 408 IPR044715 -
Bisa10g0853 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 311 IPR001680 GO:0005515
Bisa10g0853 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 275 - -
Bisa10g0853 410 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Bisa10g0853 410 SUPERFAMILY CCCH zinc finger 81 105 IPR036855 GO:0046872
Bisa10g0853 410 SMART WD40_4 235 272 IPR001680 GO:0005515
Bisa10g0853 410 SMART WD40_4 190 227 IPR001680 GO:0005515
Bisa10g0853 410 SMART WD40_4 275 312 IPR001680 GO:0005515
Bisa10g0853 410 SMART WD40_4 111 150 IPR001680 GO:0005515
Bisa10g0853 410 SMART WD40_4 362 399 IPR001680 GO:0005515
Bisa10g0853 410 Gene3D - 104 177 IPR015943 GO:0005515
Bisa10g0853 410 ProSiteProfiles Zinc finger C3H1-type profile. 80 107 IPR000571 GO:0046872
Bisa10g0853 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 159 IPR001680 GO:0005515
Bisa10g0853 410 SUPERFAMILY WD40 repeat-like 113 404 IPR036322 GO:0005515
Bisa10g0853 410 SMART c3hfinal6 80 106 IPR000571 GO:0046872
Bisa10g0853 410 SMART c3hfinal6 12 36 IPR000571 GO:0046872
Bisa10g0853 410 MobiDBLite consensus disorder prediction 55 76 - -
Bisa10g0853 410 Gene3D - 13 103 - -
Bisa10g0853 410 PRINTS G protein beta WD-40 repeat signature 299 313 IPR020472 -
Bisa10g0853 410 PRINTS G protein beta WD-40 repeat signature 137 151 IPR020472 -
Bisa10g0853 410 PRINTS G protein beta WD-40 repeat signature 259 273 IPR020472 -
Bisa10g0853 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 150 - -
Bisa10g0853 410 Pfam WD domain, G-beta repeat 237 272 IPR001680 GO:0005515
Bisa10g0853 410 Pfam WD domain, G-beta repeat 114 150 IPR001680 GO:0005515
Bisa10g0853 410 Pfam WD domain, G-beta repeat 277 311 IPR001680 GO:0005515
Bisa10g0853 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 281 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0853 Bisa-ChrBisa10 19756719 19759315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0853 117 312 Acyl Lipid Metabolism Gene Families AT3G18860 30.093 8.47e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa10g0853 WD40 0.00012 CL0186