Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0852 ATGAATACCCTAATAGCTGTGCAAGACAATGATCAATTTGCACAAGCTAGAGGGATAGATGGAGATCTCTTCAAGCCAAGGCTAGGGAGTTTAGAAGTGGTCAGAGGTGGAACAGAAGCTAACCTATTGATAACTGTTAATCTTGTCAATGTCTACATGAAAAGATATTATGCATCTACGGATCCACACACTGCTGAAGGCACAAAAATTTCCAAAGAGAAAAGTACTGAAGAAGTGAGGGAGAGCTTGCGTTTTTGGGCTCCAGAACTAGCAGAATTTCGAAGCCTTGCGTTACTTGTATGTCGGTTTTGGGATCAAGAAGGCCTGACTTTGGGATATTCTTCCAATCTATTTAATAGTATGGAGACAAAGGCAGTGAGAAGAACTGAAGGTTCCTACGGAGACATCTGCGCATATTGGCTGGCTGGGAGATGCACCAGAAACCCTTGTAGGTTTCTGCACAGAAAACCACCAACTACTTTTCATTATGGAAGGCAGTCCCATTACTTTGCTGAGAAGACACCCAAGTATAATTCAAATTACGTATCAAGTAAGAAGAGTGAAGGAGATGTGACAAGCTCCTCTAAGCCTACTCAGAAGTCATCACAGAGTATCTGTAGATACTGGATAAATGGCAATTGCATACATGGTGATAAGTGCTGGAACTTGCATTCTTGGTTTTGCGGGGAGGGGTTTTCAACGCTAGCTAAGCTACATGAACACAAGAAGATTGTCACTGGGATTGCACTACCAGTTGGATCGGACAAGCTTTTCTCTGGCAGCACTGATGGGACAGTTCGGATGTGGGACTGCCATACAGGTCAATGTTCTCATGTGATAAATCTTGGTGGTGAAGTTCGGTGTTTGATCAGTGAGGGTCCATGGGTTTTTGTTGGTTTGCCAAACGCCGTTAGAGCCTGGAACATTCAGACATCTGCTGAGTTGAATCTCGACGGACCCAAGGGGCAAGTTTTTTCCGTTGCTGCTGGCAACGATACACTTTTTGCTGGAGCAAAGGATGGTGTTATATATGCATGGAGAGGCAATTTTGACACAACGTCTTCATTTGAACCAGTGGCAACATTGAATGGCCACACTAGTGCGGTGATTTGCCTAAATGTTGGGCGCAATGTGCTCTACTCAGGTTCCATGGATGGAAGCATTAAGGCTTGGGACATTACCACATTACAGTGTACAATGACACTGGATGTACACACTGATGTTGTGACATCCCTTATTTGTTGGGATGAGTATCTGCTATCAAGTTCATTGGATGGCACAGTTAAGGTCTGGGCTGCCACTGAAGCGGGACCTTTGGCAGTAATATATACACACAATGAAGAACATGGTGTTCTTGCACTTGGTGGGATGACTGATTTTAAAGGGAAATCTATTTTGTTTTACTCATGCAATAACGATTCTGTGGGCCTCTATGAATTGCCATCATTTTCTGGGAGGGATCGATTATTCTCGAAACAAGAAGTTCGAACAATTGAAGTAGTTGCTGGTGGTTTATTTTTCACAGGAGACACGACTGAGCTTGCGTTTTTCGGCTCCAGAACTAGCAGAATTTCGAAGCCTTGCGTTGCTCGTATCTCGGTTTTGGGATCAGTGAGTATGGAGACAAAGGCAGTGAGAAGAACTGAAGGTTCCTATGCAGAAATCTGCGCATATTGGCTGGCTGGGAAATGCACCAGAAACCCTTGTAGGTTTCTGCACAGAAAACCACCAACTACTTTTCATTATGGAAGGCAGTCCCATTACTTTGCTGAGAAGACACCCAAGTATAATTCAAATTACGTATCAAGTAAGAAGAGTAAAGGAGATGTGACAAGCTCCTCTAAGGCTACTCAGAAGTCATCACAGAGTATCTGTAGATACTGGATGAATGGCAATTGCATACATGGCGATAAGTGCTGGAACTTGCATTCTTGGTTTTGCGGGGAGGGGTTTTCAACGCTAGCTAAGTTACATGAACACAAGAAGATTGTCACTGGGATTGCATTACCAGTTGGATCGGACAAGCTTTTCTCTGGCAGCACTGATGGGACAGTTCGGATGTGGGACTGCCATACAGGTCAATGTTCTCATGTGATAAATCTTGGTGGTGAAGTTAGGTGTTTGATCAGTGAGGGTCCATGGGTTTTTGTTGGTTTGCCAAACGCCGTTAGAGCCTGGAACATTCAGACATCTGCTGAGTTGAATCTCGATGGACCCAGGGGGCAAGTTTTTTCCGTTGCTGCTGGCAACGATACACTTTTTGCTGGAGCAAAGGATGGTGTTATATATGCTTGGAGAGGCAATTTTGACACAACGTCTTCATTTGAACCAGTGGCAACATTGAATGGCCACACTAGTGCGGTGATTTGCCTAACTGTTGGACGCAATGTGCTCTACTCAGGTTCCACGGATGGTAGCATTAAGGCTTGGGACGTTACCACATTACAGTGTACAATGACACTGGATGTACACACTGATGTCGTGACATCCCTTATTTGTTGGGATGAGTATCTGCTATCAAGTTCATTAGATGGCACAGTTAAGGTCTGGGCTGCCACTGAAGCGGGACCTTTGGCAGTAATATATACACACAATGAAGAACATGGTGTTCTTGCACTTGGTGGGATGACTGATTCTGAAGGGACACCCATTTTGTTTTGCTCGCGCAATGACCATTCTGTGAACCTCTATGAATTGCCATCATTTTCTACGAGGGGTCGATTATTCTCGAAACAAGAAGTTCGAACAATTGAAGTAGCTCCTGGTGGTCTATTTTTCACAGGAGACGCGACTGGTTTGTTGACAGTTTGGAAGTGGTCAGAGGTGGAGCAGAAGCTAGCCTCTTCATGA 2850 0.4442 MNTLIAVQDNDQFAQARGIDGDLFKPRLGSLEVVRGGTEANLLITVNLVNVYMKRYYASTDPHTAEGTKISKEKSTEEVRESLRFWAPELAEFRSLALLVCRFWDQEGLTLGYSSNLFNSMETKAVRRTEGSYGDICAYWLAGRCTRNPCRFLHRKPPTTFHYGRQSHYFAEKTPKYNSNYVSSKKSEGDVTSSSKPTQKSSQSICRYWINGNCIHGDKCWNLHSWFCGEGFSTLAKLHEHKKIVTGIALPVGSDKLFSGSTDGTVRMWDCHTGQCSHVINLGGEVRCLISEGPWVFVGLPNAVRAWNIQTSAELNLDGPKGQVFSVAAGNDTLFAGAKDGVIYAWRGNFDTTSSFEPVATLNGHTSAVICLNVGRNVLYSGSMDGSIKAWDITTLQCTMTLDVHTDVVTSLICWDEYLLSSSLDGTVKVWAATEAGPLAVIYTHNEEHGVLALGGMTDFKGKSILFYSCNNDSVGLYELPSFSGRDRLFSKQEVRTIEVVAGGLFFTGDTTELAFFGSRTSRISKPCVARISVLGSVSMETKAVRRTEGSYAEICAYWLAGKCTRNPCRFLHRKPPTTFHYGRQSHYFAEKTPKYNSNYVSSKKSKGDVTSSSKATQKSSQSICRYWMNGNCIHGDKCWNLHSWFCGEGFSTLAKLHEHKKIVTGIALPVGSDKLFSGSTDGTVRMWDCHTGQCSHVINLGGEVRCLISEGPWVFVGLPNAVRAWNIQTSAELNLDGPRGQVFSVAAGNDTLFAGAKDGVIYAWRGNFDTTSSFEPVATLNGHTSAVICLTVGRNVLYSGSTDGSIKAWDVTTLQCTMTLDVHTDVVTSLICWDEYLLSSSLDGTVKVWAATEAGPLAVIYTHNEEHGVLALGGMTDSEGTPILFCSRNDHSVNLYELPSFSTRGRLFSKQEVRTIEVAPGGLFFTGDATGLLTVWKWSEVEQKLASS 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0852 949 Pfam RNA-binding, Nab2-type zinc finger 624 639 - -
Bisa10g0852 949 Pfam RNA-binding, Nab2-type zinc finger 555 573 - -
Bisa10g0852 949 Pfam RNA-binding, Nab2-type zinc finger 136 154 - -
Bisa10g0852 949 Pfam RNA-binding, Nab2-type zinc finger 205 220 - -
Bisa10g0852 949 PANTHER - 597 947 IPR044715 -
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 431 IPR001680 GO:0005515
Bisa10g0852 949 SUPERFAMILY CCCH zinc finger 201 225 IPR036855 GO:0046872
Bisa10g0852 949 ProSiteProfiles Zinc finger C3H1-type profile. 550 576 IPR000571 GO:0046872
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 657 689 - -
Bisa10g0852 949 Pfam WD domain, G-beta repeat 653 689 IPR001680 GO:0005515
Bisa10g0852 949 Pfam WD domain, G-beta repeat 816 850 IPR001680 GO:0005515
Bisa10g0852 949 Pfam WD domain, G-beta repeat 234 270 IPR001680 GO:0005515
Bisa10g0852 949 Pfam WD domain, G-beta repeat 397 431 IPR001680 GO:0005515
Bisa10g0852 949 Pfam WD domain, G-beta repeat 776 811 IPR001680 GO:0005515
Bisa10g0852 949 Pfam WD domain, G-beta repeat 357 392 IPR001680 GO:0005515
Bisa10g0852 949 SUPERFAMILY CCCH zinc finger 620 644 IPR036855 GO:0046872
Bisa10g0852 949 Gene3D - 642 771 IPR015943 GO:0005515
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 270 - -
Bisa10g0852 949 Gene3D - 316 524 IPR015943 GO:0005515
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 781 820 IPR001680 GO:0005515
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 401 IPR001680 GO:0005515
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 781 814 - -
Bisa10g0852 949 SUPERFAMILY WD40 repeat-like 233 502 IPR036322 GO:0005515
Bisa10g0852 949 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Bisa10g0852 949 PRINTS G protein beta WD-40 repeat signature 798 812 IPR020472 -
Bisa10g0852 949 PRINTS G protein beta WD-40 repeat signature 676 690 IPR020472 -
Bisa10g0852 949 Gene3D - 223 315 IPR015943 GO:0005515
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 657 698 IPR001680 GO:0005515
Bisa10g0852 949 SMART WD40_4 901 938 IPR001680 GO:0005515
Bisa10g0852 949 SMART WD40_4 310 347 IPR001680 GO:0005515
Bisa10g0852 949 SMART WD40_4 729 766 IPR001680 GO:0005515
Bisa10g0852 949 SMART WD40_4 774 811 IPR001680 GO:0005515
Bisa10g0852 949 SMART WD40_4 814 851 IPR001680 GO:0005515
Bisa10g0852 949 SMART WD40_4 395 432 IPR001680 GO:0005515
Bisa10g0852 949 SMART WD40_4 355 392 IPR001680 GO:0005515
Bisa10g0852 949 SMART WD40_4 650 689 IPR001680 GO:0005515
Bisa10g0852 949 SMART WD40_4 231 270 IPR001680 GO:0005515
Bisa10g0852 949 Gene3D - 772 949 IPR015943 GO:0005515
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 395 - -
Bisa10g0852 949 Gene3D - 134 222 - -
Bisa10g0852 949 Gene3D - 551 641 - -
Bisa10g0852 949 ProSiteProfiles Zinc finger C3H1-type profile. 200 227 IPR000571 GO:0046872
Bisa10g0852 949 ProSiteProfiles Zinc finger C3H1-type profile. 136 157 IPR000571 GO:0046872
Bisa10g0852 949 SUPERFAMILY WD40 repeat-like 652 943 IPR036322 GO:0005515
Bisa10g0852 949 ProSitePatterns Trp-Asp (WD) repeats signature. 798 812 IPR019775 -
Bisa10g0852 949 SMART c3hfinal6 619 645 IPR000571 GO:0046872
Bisa10g0852 949 SMART c3hfinal6 200 226 IPR000571 GO:0046872
Bisa10g0852 949 SMART c3hfinal6 551 575 IPR000571 GO:0046872
Bisa10g0852 949 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Bisa10g0852 949 ProSitePatterns Trp-Asp (WD) repeats signature. 379 393 IPR019775 -
Bisa10g0852 949 ProSiteProfiles Zinc finger C3H1-type profile. 619 646 IPR000571 GO:0046872
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 821 850 IPR001680 GO:0005515
Bisa10g0852 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 279 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0852 Bisa-ChrBisa10 19730430 19748856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0852 656 851 Acyl Lipid Metabolism Gene Families AT3G18860 30.556 1.51e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa10g0852 WD40 0.00034 CL0186