Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0851 ATGAATCCACACACAGCTGAAAGCACAAAAATTTCCAAAGAGAAAAGTACTGAAGAAGTGAGGAAGAGCTTGCGTTTTTCGGCTTCAGAACTAGCAGAATTTCGAAGCCTTGAGTTGCTCGTATCTCGTATGGAGACAAAGGCAGTGAGAAGATCTGAAGGTCCCTACGGAGAAATCTGCGCATATTGGCTGGCTGGGAGATGCACCAGAAACCCTTGTAGGTTTCTGCACAGAAAACCACCAACTACTTTTCATTATGGAAGGCAGTCCCATTACTTTGCTGAGAAGACACCCAAGTATAGTTCAAATAATGTATCAAGTAAGAAGAGTGAAGGAGATGTGACAAGCTCCTCTAAGGCTACTCAGAAGTCATCACAGAGTATCTGTAGATACTGGATGAATGGCAATTGCATACATGGTGATAAGTGCTGGAACTTGCATTCTTGGTTTTGCGGGGAGGGGTTTTCAACGCTAGCTAAGTTACATGAACACAAGAAGATTGTCACTGGGATTGCATTACCAGTTGGATCGGACAAGCTTTTCTCTGGCAGCACTGATGGGACAGTTCGGATGTGGGACTGCCATACAGGTCAATGTTCTCATGTGATAAATCTTGGTGGTGAAGTTAGGTGTTTGATCAGTGAGGGTCCATGGGTTTTTGTTGGTTTGCCAAACGCCGTTAGAGCCTGGAACATTCAGACATCTGCTGAGTTGAATCTCGATGGACCCAGGGGGCAAGTTTTTTCCGTTGCTGCTGGCAACGATACACTTTTTGCTGGAGCAAAGGATGGTGTTATATATGCTTGGAGAGGAAATTTTGACACAACGTCTTCATTTGAACCAGTGGCAACATTGAATGGCCACACTAGTGCGGTGATTTTCCTAACTGTTGGACGCAATGTGCTCTACTCAGGTTCCACGGATGGTAGCATTAAGGCTTGGGACGTTACCACATTACAGTGTACAATGACACTGGATGTGCACACTGATGTCGTGACATCCCTTATTTGTTGGGATGAGTATCTGCTATCAAGTTCATTAGATGGCACAGTTAAGGTCTGGGCTGCCACTGAAGCGGGACCTTTGGCAGTAATATATACACACAATGAAGAACATGATGTTCTTGCACTTGGTGGGATGATTGATTCTGAAGGGAAACCCATTTTGTTTTGCTCGTGCAATGACCATTCTGTGAGCCTCTATGAATTGCCATCATTTTCTTGGAGGGGTCGATTATTCTCGAAACAAGAAGTTCGAACAATTGAAGTAGCTTCTGGTGGTCTATTTTTCACAGGAGATGCGACTGGTTTGTTGACAGTTTGGAGGTGGTCAGAAGTGGAGCTGAAGCTGGCTTCTTCATGA 1362 0.4464 MNPHTAESTKISKEKSTEEVRKSLRFSASELAEFRSLELLVSRMETKAVRRSEGPYGEICAYWLAGRCTRNPCRFLHRKPPTTFHYGRQSHYFAEKTPKYSSNNVSSKKSEGDVTSSSKATQKSSQSICRYWMNGNCIHGDKCWNLHSWFCGEGFSTLAKLHEHKKIVTGIALPVGSDKLFSGSTDGTVRMWDCHTGQCSHVINLGGEVRCLISEGPWVFVGLPNAVRAWNIQTSAELNLDGPRGQVFSVAAGNDTLFAGAKDGVIYAWRGNFDTTSSFEPVATLNGHTSAVIFLTVGRNVLYSGSTDGSIKAWDVTTLQCTMTLDVHTDVVTSLICWDEYLLSSSLDGTVKVWAATEAGPLAVIYTHNEEHDVLALGGMIDSEGKPILFCSCNDHSVSLYELPSFSWRGRLFSKQEVRTIEVASGGLFFTGDATGLLTVWRWSEVELKLASS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0851 453 PANTHER - 84 447 IPR044715 -
Bisa10g0851 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 324 IPR001680 GO:0005515
Bisa10g0851 453 ProSiteProfiles Zinc finger C3H1-type profile. 123 150 IPR000571 GO:0046872
Bisa10g0851 453 SUPERFAMILY CCCH zinc finger 124 148 IPR036855 GO:0046872
Bisa10g0851 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 202 IPR001680 GO:0005515
Bisa10g0851 453 MobiDBLite consensus disorder prediction 98 119 - -
Bisa10g0851 453 SMART WD40_4 358 402 IPR001680 GO:0005515
Bisa10g0851 453 SMART WD40_4 405 442 IPR001680 GO:0005515
Bisa10g0851 453 SMART WD40_4 318 355 IPR001680 GO:0005515
Bisa10g0851 453 SMART WD40_4 278 315 IPR001680 GO:0005515
Bisa10g0851 453 SMART WD40_4 154 193 IPR001680 GO:0005515
Bisa10g0851 453 SMART WD40_4 233 270 IPR001680 GO:0005515
Bisa10g0851 453 Gene3D - 57 145 - -
Bisa10g0851 453 Gene3D - 146 229 IPR015943 GO:0005515
Bisa10g0851 453 ProSiteProfiles Zinc finger C3H1-type profile. 54 80 IPR000571 GO:0046872
Bisa10g0851 453 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Bisa10g0851 453 SMART c3hfinal6 55 79 IPR000571 GO:0046872
Bisa10g0851 453 Gene3D - 230 451 IPR015943 GO:0005515
Bisa10g0851 453 PRINTS G protein beta WD-40 repeat signature 180 194 IPR020472 -
Bisa10g0851 453 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Bisa10g0851 453 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Bisa10g0851 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 354 IPR001680 GO:0005515
Bisa10g0851 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 318 - -
Bisa10g0851 453 SUPERFAMILY WD40 repeat-like 156 448 IPR036322 GO:0005515
Bisa10g0851 453 Pfam WD domain, G-beta repeat 157 193 IPR001680 GO:0005515
Bisa10g0851 453 Pfam WD domain, G-beta repeat 280 315 IPR001680 GO:0005515
Bisa10g0851 453 Pfam WD domain, G-beta repeat 320 354 IPR001680 GO:0005515
Bisa10g0851 453 ProSitePatterns Trp-Asp (WD) repeats signature. 302 316 IPR019775 -
Bisa10g0851 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 161 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0851 Bisa-ChrBisa10 19720390 19723415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0851 160 355 Acyl Lipid Metabolism Gene Families AT3G18860 30.556 7.18e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa10g0851 WD40 0.00014 CL0186