Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0778 ATGCCTCCGAGGACGGTGAAGAGAGGGGCTGCAGCGGCTGCGGCAAAGCGAGGGGGCAGAGTGACCAGAGGAACGCCAAAGGCTGCCCAGAATCAGCAGCATCCTGAAGTTCCAGAAGAGGTTGTAAAACATGAAGAAAGACCTGCTGTTGAGGACGAGGTTAAGGTCGAGGAGAAGCCTGTTGTCGAGGAGAAACCGGTCGTTGAGGAGAAACCGGTTGTTGAGGATAAGCAAGTTGGTATTGATGTGAACCAGTTGGCTTTTGATATGAACCAAGTGGCTTCAGAGGCTGAAGTAGAAACAAATCTCGTCGCTAATGGGTCGGCTGGTTTGAAAAACCATGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAAAAAGATGAACGCTTAGATCTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGGTCAAGATGAGGTTCAGGAGATAGGAGATGAAGCAGAGGAAGAACCTGATGAGAATGTAGGTGAAGAAGAGGGTGAGGAGGAAGTGGAAGATGTTCATGGAGAACTTGAGGGTGAAGAGGATGATGAGCATACTGGAGAGGAGCATGAGCATCCTGAGATGGCTGATGTAGAGGAAGAGGAACACCATAAAGGTCTGAAGGAGAGGAGGAAGCGCAAGGAATTTGAAGTCTTTGTTGGGGGCTTAGATAAAGATGCTACTGAGGATGATCTGAGGAAGGTTTTTACTGCAGTTGGTGTGGTTACTGAAGTGAGGCTGATGATGAATCCTCAGACTGAAAAGAACAAGGGTTTTGCTTTCTTGCGCTTCGCCACTGTGGAGCAAGCAAAACGAGCTGTTACAGAGCTTAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACCCCAAGTCAGGACAGTGATACCCTTTTTTTGGGTAACATTTGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTACGGAGTTGAGAATGTTGAGGATTTGACTTTAGTTGAAGATAGTAACAATGAGGGAATGAACCGTGGATTTGCATTTTTAGAATTTTCATCTCGCTCAGATGCCATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTATTTGGAGTTGATCGTCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGATCCTGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTCATTGATGGTCTGCCTCCTTCATGGGATGAGGATCGAGTGCGGGTTCTTCTTAAAAAATATGGAGAAATTGAGAAGATTGAGCTTGCCAGAAACATGCCTTCTGCTAAGAGGAAGGACTTTGGATTTGTTACATTTGGGACCCATGATGCTGCTGTGACATGTGCTAAAAGCATTAACAATGCTGAGTTAGGTGATGGAGACAGCAAGGCAAAAGTTAGGGCCAGATTATCAAGACCACTTCAGAGAGGCCATGGAAAACATGTTGGCCGTGGGGACTTCCGTTCTGGTCGTGGTTCTGGAAGAATTGCAAGGCCATCATGGACTCGACCTGCACCTCGTAGTTTCCCTCCCCGTGGCGTAAGAGGCATTGGAAGTCGTGTCCCACCAGTAAGGCCTGTTAGTGTGAGAGATAGACGTCCAGTAATGTCCATGCCAGTCAGAGCCAGGCCAGTAGCTCCTCCACCTAGATCCTATGATAGGAGACCAGCTGTTCCTGCATATCCAAAAAGTAGCAGCATGAAGAGAGATTATGGTCGGCGTGAGGATCTGCCACCTCCAAGAACCAGGGTAGCAGCAGATTATGGCTCTAGGGTGGCCTCTGAAAGACGCCCATCTTATAGAGATTATCCAGGCCGTGGCCCTGCCTACTCTGATCTTCCTAGAAGTACGTCTCGTGCTGCACCAAGGAGGGGTTATGTGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCGCCTCCACCTCCCCATCCAAGTTACCGTGAAGGACGCCCTCGTGATTATGAGAATATCTCTGGTTCGAAACGCCAGTATGCTGCAATAGATGATGTTCCTCCACGATATGCAGAAAGTGGTGCTCGCCAATCAAGAGCTCGATTGGACTATGACTATGGAGGTAGTGCTTCACAGTATGGGGATGCATATGGTGATAGAATTGGGAGATCTAGTCTAGGATATGGTGGCAGCAGAATTATAGTGGAGGTTCTTTTGGCAGTAATGATGTTGGTGGTATGTACTCATCGAGTTATGGTGGTGATTACATGTCTCGGGGAAATGATGTTGGCGGCAGCTCATACTCATCACTGTATTCTGGCAGAGGTGTGGGTGGTAGTGGCAGTTACATGGGAGGTAGTGGATCTGGGTCTTATTATTAAGATATGA 2394 0.4687 MPPRTVKRGAAAAAAKRGGRVTRGTPKAAQNQQHPEVPEEVVKHEERPAVEDEVKVEEKPVVEEKPVVEEKPVVEDKQVGIDVNQLAFDMNQVASEAEVETNLVANGSAGLKNHEEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIGQDEVQEIGDEAEEEPDENVGEEEGEEEVEDVHGELEGEEDDEHTGEEHEHPEMADVEEEEHHKGLKERRKRKEFEVFVGGLDKDATEDDLRKVFTAVGVVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRVLLKKYGEIEKIELARNMPSAKRKDFGFVTFGTHDAAVTCAKSINNAELGDGDSKAKVRARLSRPLQRGHGKHVGRGDFRSGRGSGRIARPSWTRPAPRSFPPRGVRGIGSRVPPVRPVSVRDRRPVMSMPVRARPVAPPPRSYDRRPAVPAYPKSSSMKRDYGRREDLPPPRTRVAADYGSRVASERRPSYRDYPGRGPAYSDLPRSTSRAAPRRGYVDDGYGQRFERPPPPPPPHPSYREGRPRDYENISGSKRQYAAIDDVPPRYAESGARQSRARLDYDYGGSASQYGDAYGDRIGRSSLGYGGSRIIVEVLLAVMMLVVCTHRVMVVITCLGEMMLAAAHTHHCILAEVWVVVAVTWEVVDLGLIIKI 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0778 797 MobiDBLite consensus disorder prediction 155 199 - -
Bisa10g0778 797 MobiDBLite consensus disorder prediction 489 673 - -
Bisa10g0778 797 MobiDBLite consensus disorder prediction 108 224 - -
Bisa10g0778 797 SUPERFAMILY RNA-binding domain, RBD 225 308 IPR035979 GO:0003676
Bisa10g0778 797 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 308 IPR000504 GO:0003723
Bisa10g0778 797 CDD RRM_SF 409 475 - -
Bisa10g0778 797 CDD RRM_SF 312 390 - -
Bisa10g0778 797 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 165 310 - -
Bisa10g0778 797 Gene3D - 151 310 IPR012677 -
Bisa10g0778 797 MobiDBLite consensus disorder prediction 200 224 - -
Bisa10g0778 797 Gene3D - 398 515 IPR012677 -
Bisa10g0778 797 Gene3D - 311 393 IPR012677 -
Bisa10g0778 797 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 20 724 - -
Bisa10g0778 797 MobiDBLite consensus disorder prediction 112 126 - -
Bisa10g0778 797 MobiDBLite consensus disorder prediction 127 148 - -
Bisa10g0778 797 MobiDBLite consensus disorder prediction 1 47 - -
Bisa10g0778 797 SMART rrm1_1 408 483 IPR000504 GO:0003723
Bisa10g0778 797 SMART rrm1_1 231 304 IPR000504 GO:0003723
Bisa10g0778 797 SMART rrm1_1 311 390 IPR000504 GO:0003723
Bisa10g0778 797 FunFam RNA recognition water-stress protein1 397 518 - -
Bisa10g0778 797 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 300 IPR000504 GO:0003723
Bisa10g0778 797 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 409 475 IPR000504 GO:0003723
Bisa10g0778 797 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 378 IPR000504 GO:0003723
Bisa10g0778 797 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 407 489 IPR000504 GO:0003723
Bisa10g0778 797 MobiDBLite consensus disorder prediction 583 597 - -
Bisa10g0778 797 Coils Coil 108 131 - -
Bisa10g0778 797 CDD RRM_SF 232 303 - -
Bisa10g0778 797 FunFam Heterogeneous nuclear ribonucleoprotein Q 311 393 - -
Bisa10g0778 797 SUPERFAMILY RNA-binding domain, RBD 308 475 IPR035979 GO:0003676
Bisa10g0778 797 MobiDBLite consensus disorder prediction 557 571 - -
Bisa10g0778 797 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 394 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0778 Bisa-ChrBisa10 17548818 17554149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0778 232 475 Eukaryotic Initiation Factors Gene Family AT1G49760 24.125 1.07e-14 76.3