Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0670 ATGCTGCTTGGGCAAGCTCCTCCTGTTAACTTCATATCCAAACCTAATCGATTGGAATTGCAATTTCAAAGTCATGCCCATAACTTCTCCTTCGGTCATTCTTGTTTCGGTACCAAAAAGTTGCTCACAAATGTTGGAAATGCGGTTCTTGTTAGAGCTGGGTATTCTCCTACTCCTAAAGACGTTCTCTCTTGGAACCCTTCCACCGCCAACGATGCGTTGAGCTCGAATTTAGAGAATTCATCAGATATTAGCATTTTAAATGAAGATGTTGAGTGTGACCCAGTTATTACAAATGGCGATCCTATAGTAAAATCTAAGGGGAGGTTATCTGGAAGTTTTGGTAGACTGAAAGCAGAGAAAGTGAAGGCTCTCATCCACAGAAATTCTCGCATGAAGCAAGAAAGAAGCAGTAATGATGATGAACTAGTTGTAGAACATGAGGCATTAGGAATAGAAGATGACTTGGATCAATCTGAAAACTTTGTAAGTCTTGGATCAAATTCACACGTAGGATACCAGAATACACCCAATAAATCTCGAATTTCTGACAACAGAATAGTAAGTTCACATATGTCAGTTGCAAGACAGTCTGACTCTAAAGGATGGGATAATGGAGGATCTTTGCGCACAGTCAAGTTTGGATCACAAAAAACACTAAAGGAACAGAGAAAACCAACTGACAGTGACTTTTTCAGTCGAAATTCCTTCAAAGATCTTGGGTACAGTGATTATATTATTCAATCTCTGGCAAATCAGTTTTTTCACCGGCCTTCACATATACAGGCCATGGCTTTTCAACCAGTACTTAGTGGAAAAAGCTGTGTCATAGCTGATCAAAGTGGTTCTGGAAAGACGTTGGCATATCTTGCACCAATAATTCAGAATCTTAGACAAGAAGAATTGGAAGGACATAGCAAATTCTCTTCACAAGCTCCTCGAGTGGTTATATTGGCACCAACAGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGCCGATCAATGTCAAAATCTGGAGTGCCATTCAAATCTATGGTTGTCACAGGTGGCTTTCGACAGAGAACTCAACTGGAGAATTTACAACAGGGTGTTGATGTTTTAATAGCAACACCTGGCCGTTTTATGTTTCTAATCAATGAAGGCTTCTTGCAGTTAACGAGTCTAAGATGTGCGGTGTTGGATGAGGTAGACATACTTTTTGGAGATGAGGACTTTGAAGCGGCGCTTCAGTGCTTGATTAATTCTTCACCAGTTGCCACACAATATTTATTCGTGACTGCGACTCTACCAAAAGACATTTACAATAAACTAGTTGAAGTTTTTCCTGATTGTGAAATGATCATGGGTCCTGGTATGCACCGGATAAGCTCTCGCCTTGAGGAGCTTCTGGTTGATTGCAGTGGAGAAGATGGACAAGAAAAATCTCCCGATACAGCATTTCTAAATAAGAAATCCGCTCTTCTGCAGCTTGCGGAGGGAAGTCCTGTCCCAAAAACCATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAGAATGCATTGAAGCGTTTTGATAGGAAAGAAACTCGTATACAAGTTCTACCTTTCCATGCTGCCATGACGCAAGAATCACGGCTCGCTAATATGGAGAAGTTTACACATTCTCAATCAAAAGAAGTCTCCCAGTTTCTGGTTTGTACAGACCGAGCATCACGAGGAATTGATTTTACAGGAGTTGACCATGTCATTCTTTTTGACTTCCCACGCGATCCGAGTGAATATGTACGGCGCGTCGGAAGAACTGCCAGAGGTGCCGGTGGAAGGGGCAAGGCGTTTATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCGCGTAAAATAATGGCAAGAAACCAGAAGGGTCACCCGCTACATGATGTGCCGGCTGCTTATGAGCTTACGAAGTAA 1929 0.4173 MLLGQAPPVNFISKPNRLELQFQSHAHNFSFGHSCFGTKKLLTNVGNAVLVRAGYSPTPKDVLSWNPSTANDALSSNLENSSDISILNEDVECDPVITNGDPIVKSKGRLSGSFGRLKAEKVKALIHRNSRMKQERSSNDDELVVEHEALGIEDDLDQSENFVSLGSNSHVGYQNTPNKSRISDNRIVSSHMSVARQSDSKGWDNGGSLRTVKFGSQKTLKEQRKPTDSDFFSRNSFKDLGYSDYIIQSLANQFFHRPSHIQAMAFQPVLSGKSCVIADQSGSGKTLAYLAPIIQNLRQEELEGHSKFSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFMFLINEGFLQLTSLRCAVLDEVDILFGDEDFEAALQCLINSSPVATQYLFVTATLPKDIYNKLVEVFPDCEMIMGPGMHRISSRLEELLVDCSGEDGQEKSPDTAFLNKKSALLQLAEGSPVPKTIVFCNKIETCRKVENALKRFDRKETRIQVLPFHAAMTQESRLANMEKFTHSQSKEVSQFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAGGRGKAFIFVVGKQVSLARKIMARNQKGHPLHDVPAAYELTK 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0670 642 CDD SF2_C_DEAD 459 610 - -
Bisa10g0670 642 Pfam Helicase conserved C-terminal domain 483 599 IPR001650 -
Bisa10g0670 642 CDD DEADc 246 435 - -
Bisa10g0670 642 Gene3D - 459 633 IPR027417 -
Bisa10g0670 642 Gene3D - 195 447 IPR027417 -
Bisa10g0670 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 611 IPR027417 -
Bisa10g0670 642 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 642 IPR001650 -
Bisa10g0670 642 Pfam DEAD/DEAH box helicase 260 433 IPR011545 GO:0003676|GO:0005524
Bisa10g0670 642 SMART helicmild6 510 600 IPR001650 -
Bisa10g0670 642 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 266 447 IPR014001 -
Bisa10g0670 642 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 235 263 IPR014014 GO:0003724
Bisa10g0670 642 SMART ultradead3 254 458 IPR014001 -
Bisa10g0670 642 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 175 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0670 Bisa-ChrBisa10 14979273 15007510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0670 235 621 Eukaryotic Initiation Factors Gene Family AT3G19760 26.098 1.50e-29 119