Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0665 ATGCTTAAATGTGTACGGGCAAAACAAAACATTATTGATCTTAATAGAGGAGAAAGCAGGGGTAGAAGCATCACACTAAACCTAGGCCTGCCGCTGCGTAGCTCACTCCTATCGTTTCTGGGAGCAGATCGCGGCTCAATGGCGTACGTTAAGGCTCAGAAATCAAAGGCCTACTTCAAGAGGTATCAAGTTAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGAGCCAGGATTCGGCTGATTAATCAGGACAAGAACAAATATAACACACCCAAGTACCGATTTGTGGTTCGATTTACGAACAAGGATATCGTTGCCCAAATAACATCTGCAAGTATTGCTGGTGATATGGTTCTTGCTGCCGCTTATGCACATGAGTTGCCACGCTATGGTCTTAAAGTAGGTCTCACAAACTATGCAGCAGCATATTGCACTGGACTTCTTTTGGCTCGTCGGGTCCTTAAAACTCTTGAAATGGATCAAGAGTATGAGGGGAATGTAGAGGCTACTGGAGAGGATTTTTCAGTTGAACCTGCTGATGTTAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACAACAACTGGAAATCGTGTATTTGGTGCCCTTAAGGGAGCTTTGGATGGAGGTCTGGATATCCCTCACAGTGATAAAAGGTTTGCTGGTTTTACCAAGGACAAGAAGGAACTTGATCCAGAAGTTCACCGCAAATATATCTTTGGTGGCCATGTTGCTGCCTACATGAAGATTTTGATGGAAGATGAACCAGAGAAATACCAGTCTCATTTCAGCGAATACATCAAGCAAGGATTAGAGCCTGATGGACTTGAGGCAATGTACAAAAAGGTTCATGCTGCTATACGGGCAGATCCGACATTGAAGAAGTCAGAGAAGCAGCCACCCAAGGAACACAAGAGGTACAACTTGAAGAAGCTTAGCTATGAGGAGAGGAAGGCTAAGTTGGTCGCACGATTACAGGCTCTCAATTCAGCAGCATTAGCTGTTGATGATGAGGATGACGATGAGTGA 1044 0.4464 MLKCVRAKQNIIDLNRGESRGRSITLNLGLPLRSSLLSFLGADRGSMAYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQITSASIAGDMVLAAAYAHELPRYGLKVGLTNYAAAYCTGLLLARRVLKTLEMDQEYEGNVEATGEDFSVEPADVRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFTKDKKELDPEVHRKYIFGGHVAAYMKILMEDEPEKYQSHFSEYIKQGLEPDGLEAMYKKVHAAIRADPTLKKSEKQPPKEHKRYNLKKLSYEERKAKLVARLQALNSAALAVDDEDDDE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0665 347 PANTHER RIBOSOMAL PROTEIN L5-RELATED 47 336 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa10g0665 347 Coils Coil 316 336 - -
Bisa10g0665 347 CDD Ribosomal_L18_L5e 87 216 - -
Bisa10g0665 347 FunFam 60S ribosomal protein L5 47 337 - -
Bisa10g0665 347 Gene3D - 47 337 - -
Bisa10g0665 347 SUPERFAMILY Translational machinery components 57 298 - -
Bisa10g0665 347 Hamap 50S ribosomal protein L18 [rplR]. 60 292 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa10g0665 347 PRINTS Ribosomal protein L5 signature 210 229 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa10g0665 347 PRINTS Ribosomal protein L5 signature 89 108 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa10g0665 347 PRINTS Ribosomal protein L5 signature 190 209 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa10g0665 347 PRINTS Ribosomal protein L5 signature 66 85 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa10g0665 347 PRINTS Ribosomal protein L5 signature 130 150 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa10g0665 347 PRINTS Ribosomal protein L5 signature 252 272 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa10g0665 347 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 60 221 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bisa10g0665 347 Pfam Ribosomal L18 C-terminal region 281 334 IPR025607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0665 Bisa-ChrBisa10 14769533 14774168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0665 47 337 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 81.787 1.15e-180 500