LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa10g0641	ATGGTTCTAAGTAGCCAATTTTTCAGTGCTCACATTGTTATTATCATCTGGCTACTGCTTTGTTGTAGCATGAACAATGGGACTGAAACTGATATCTTCTGCTTGAGGAGTATAAAAGACTCACTTGAAGACACTTCTGGTAATTTGCAGTCTTCCTGGAATTTTAATAACGACACAGAAGGCTTTATCTGTCATTTTGCTGGGGTTGAGTGCTGGCATGATGATGAAAACAGAGTTTTAAATCTCAAGCTGTCAAATATGGGACTCAAGGGTCAATTTCCTCGTTCCTTACAAAATTGCTCAAGCTTAACAGGATTGGATCTTTCACTCAACAAATTGTCTGGAACCATTCCTGCAGATATCTCTGTTCTTCTTAAATTTGTGACATCCCTTGACCTCTCTTCAAATAACTTTTCAGGACAGATCCCTGTGGACCTTGCAAATTGCTCCTATCTTAATGTCCTTAAACTTGACCAAAATCGACTAACTGGTCAAATTCCTCTACAATTGGCCCAGCTCACACGACTTAAGACCTTTACTGTCACCAACAATCTTTTAACAGGGCAAGTTCCAGCTTTTCAAAGTTCTGGTATTACTGCAGATAGTTATGCAAATAATCCAGGACTTTGTGGTGGTCCCTTGGACGCTTGCCAGGGGAAGTCTTCCAAGAGTAACACCGCAGTTATTGCTGGTGCAGCTGTTGGTGGAGTGATTTTTGCAGCATTAGGATTGGCTGTTGTGATGTTCTTCTTTGTGCGGCGAGTTTCTGTGAAGAAGAAGGAAGAGGACCCTGAAGGAAATAAATGGGCAAGAAGTCTTAAGGGAACTAAAGGAATAAAGGTTTCTATGTTTGAGAAGTCAGTTTCAAAAATGAAATTGAGTGATCTCATGAAGGCCACTAACAACTTCAGTAAAGACAATATTATTGGGACAGGAAGAACAGGAACAGTCTACAAAGCTGTCCTTGATGATGGCAGCACAATACTCGCAGTTAAAAGGTTGCAGGAATCTCAATACTCAGAGAAAGAATTTATGTCTGAGATGGCTACATTGGGGACTGTCAGACATCCTAACTTGGTTCCCCTTTTAGGTTTTTGCGTTGCCAAAAAGGAGAGGCTTTTGATCTATAGAAATATGGAAAATGGAACCCTTCATGATCAGCTACATCCTGCTGCTGGTGGGAGCACATTGGAGTGGTCTGTAAGGTTAAAAATTGCTGTTGGGGCAGCCAAAGGATTAGCATGGCTTCATCATAGCTGCAATCCCCGTATTATCCACAGAAACATAAGCTCTACGTGCATCTTGTTGGATGCTGATTTTGAGCCAAAAATTTCTGATTTTGGCCTTGCTAGATTGATGAATCCAATCGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGTGATCTAGGTTATGTTGCTCCTGAGTATACAAGAACTTTGGTGGCTACCCCAAAGGGAGATGTTTATAGTTTTGGAACTGTGCTTCTTGAGCTGGTGACAGGTGAAAGACCTACCCATGTGGCTAAAGCTCCTGAAAATTTCAAAGGAAATTTGGGGGAATGGATTTTACAGCTCTCAAGCAAATCTCAACTCCAGGATGCTATTGATGAATCACTAGTTGGGAAGGGTGTTGATAGTGAGATATTCCAATCTCTTAAGGTTGCTTGCAACTGTGTTTCACCAAACCCAAAGGAGAGGCCCACTATGTTTGAAGTGTATCAACTTCTAAGAGCAGTTGGAGCAAGATACAATTTCACAGCTGAGGATGAACTTTTGGTACCTACAGATACTGGTGATGCTGCTAATTTAGAGGAACTTATCGTTGCTCGAGAGGAAAAAGATTGA	1851	0.4122	MVLSSQFFSAHIVIIIWLLLCCSMNNGTETDIFCLRSIKDSLEDTSGNLQSSWNFNNDTEGFICHFAGVECWHDDENRVLNLKLSNMGLKGQFPRSLQNCSSLTGLDLSLNKLSGTIPADISVLLKFVTSLDLSSNNFSGQIPVDLANCSYLNVLKLDQNRLTGQIPLQLAQLTRLKTFTVTNNLLTGQVPAFQSSGITADSYANNPGLCGGPLDACQGKSSKSNTAVIAGAAVGGVIFAALGLAVVMFFFVRRVSVKKKEEDPEGNKWARSLKGTKGIKVSMFEKSVSKMKLSDLMKATNNFSKDNIIGTGRTGTVYKAVLDDGSTILAVKRLQESQYSEKEFMSEMATLGTVRHPNLVPLLGFCVAKKERLLIYRNMENGTLHDQLHPAAGGSTLEWSVRLKIAVGAAKGLAWLHHSCNPRIIHRNISSTCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTHVAKAPENFKGNLGEWILQLSSKSQLQDAIDESLVGKGVDSEIFQSLKVACNCVSPNPKERPTMFEVYQLLRAVGARYNFTAEDELLVPTDTGDAANLEELIVAREEKD	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa10g0641	616	FunFam	Inactive LRR receptor-like serine/threonine-protein kinase BIR2	264	378	-	-
	Bisa10g0641	616	Pfam	Leucine rich repeat N-terminal domain	30	72	IPR013210	-
	Bisa10g0641	616	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	379	592	-	-
	Bisa10g0641	616	CDD	TM_EGFR-like	224	260	-	-
	Bisa10g0641	616	CDD	STKc_IRAK	309	578	-	-
	Bisa10g0641	616	FunFam	Nuclear pore complex protein NUP107	28	192	-	-
	Bisa10g0641	616	ProSiteProfiles	Protein kinase domain profile.	303	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa10g0641	616	Gene3D	Transferase(Phosphotransferase) domain 1	379	594	-	-
	Bisa10g0641	616	Pfam	Protein kinase domain	304	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa10g0641	616	SUPERFAMILY	L domain-like	29	193	-	-
	Bisa10g0641	616	SUPERFAMILY	Protein kinase-like (PK-like)	281	578	IPR011009	-
	Bisa10g0641	616	ProSitePatterns	Protein kinases ATP-binding region signature.	309	332	IPR017441	GO:0005524
	Bisa10g0641	616	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	35	193	-	-
	Bisa10g0641	616	Gene3D	Ribonuclease Inhibitor	29	219	IPR032675	-
	Bisa10g0641	616	Gene3D	Phosphorylase Kinase; domain 1	264	377	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa10g0641	Bisa-ChrBisa10	14200502	14202769	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa10g0641	12	592	Receptor kinase-like Gene Family	AT3G28450	47.782	0.0	540

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-Xa	Bisa10g0641		Pkinase	1.7e-40	CL0016