Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0590 ATGGCTAAGCCGGGAGTGGTGGTGGTGGAATCTGATCCGACGGCGGCGGCGGCGAAGGCGTCGGAGTTGAAGAAGGAGTTCCAGCGATTGGTGAAGTCTATCGTCGATGATGAGGATTGCAGCACCCAAACCATTGATCGAGCCAAGGAAGTTCTCTGTATGCTTCAGGACTTGAAGCTTCGAAAGCGACCGTCGTCGTCGTCGTCGCCGTCTTCGCAATCATCGTCGTCGCTCTCTCTGAAGCTTCACAAGAATCCGATCACTTGTCCGGAAGAATTTAAGTGCCCGCTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGACAGACATATGATAGGCCCTTCATTCAGAAATGGCTGAAATCTGGGAACAGAACTTGCCCTCAAACCCAACAAGTTCTGTCACACACTGTCCTCACTCCAAATCACCTCATAAGGGAAATGATATCACAATGGCGCAAGAACAACGGTGTTGAATTTTCCAATCAAGTGCACTATACTTACAATGATGAGGAAGGTGTAATAACAGAAGCCAATCGCGATCATTTTCTTTCTTTGCTCGAGAAAATGTCCTCATCCTTGCTTTCTGATCAGAAAGCAGCTGCGAAGCAGCTTCGTTTGTTGACAAAGAAAATGCCTTCCTATAGGACCCTCTTTGGTGAAACTTCACAAGCCATTTCTCAGATTCTCAAACCAATCTCTGAAAGTGACTCCTTTAACAGCATTCACCCTGATCTCCAAGAAGATGTGATCACAATACTTTTGAACATCTCAATCCATGACAGCAACAAGAAGCTTGTAGCCGAAAATCCAATGGTGATTCCACTCCTTGTAAAGGCCTTAAGCTTAGGAACCATAGAAACCAGAAGCAATTCTGCAGCAACCCTTTTCACTTTATCTGCTCTAGACTCAAACAAGGAGGTCATAGGGAAATCTGGCGCCTTAAAACTGTTAATCAACCTCTTAGATGAAGGGCATCCCATGGCCATGAAGGATGCTGCTTCAGCAATCTTCACATTGTGTGTGATTCATGAGAACAAGGCAAGAACCGTGAGGGATGGTGCAGTGAGTGTGATACTAAGGAAGATCTCGAGCCGGGTTCGTGTTGATGAATTGCTTGCAATCCTTGCGCTGCTTTCAAGTCAGCAGAAGGCTGTTCAGGACATGGTGGATCTCAGAGCTGTTCCAATCTTGCTGAGTATCATGAGGGAGAGTAATTGCGAGCGAAACAAGGAGAACTGTGTAGCAATTCTTCAAACCATTTGCTCGTATGATAGGACAAAGTTGAAGGAGGTAAAGGAAGAGGAGATCACACATGGAACAATCTCTGAGCTTGTACTGAATGGAACTTCAAGGGCCAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTGAACAGAGTTGTTAATATTACACACACTGCATAA 1434 0.4561 MAKPGVVVVESDPTAAAAKASELKKEFQRLVKSIVDDEDCSTQTIDRAKEVLCMLQDLKLRKRPSSSSSPSSQSSSSLSLKLHKNPITCPEEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLKSGNRTCPQTQQVLSHTVLTPNHLIREMISQWRKNNGVEFSNQVHYTYNDEEGVITEANRDHFLSLLEKMSSSLLSDQKAAAKQLRLLTKKMPSYRTLFGETSQAISQILKPISESDSFNSIHPDLQEDVITILLNISIHDSNKKLVAENPMVIPLLVKALSLGTIETRSNSAATLFTLSALDSNKEVIGKSGALKLLINLLDEGHPMAMKDAASAIFTLCVIHENKARTVRDGAVSVILRKISSRVRVDELLAILALLSSQQKAVQDMVDLRAVPILLSIMRESNCERNKENCVAILQTICSYDRTKLKEVKEEEITHGTISELVLNGTSRAKRKASGILERLNRVVNITHTA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0590 477 SMART arm_5 384 426 IPR000225 GO:0005515
Bisa10g0590 477 SMART arm_5 305 345 IPR000225 GO:0005515
Bisa10g0590 477 SMART arm_5 263 304 IPR000225 GO:0005515
Bisa10g0590 477 PANTHER U BOX DOMAIN-CONTAINING 10 467 - -
Bisa10g0590 477 SUPERFAMILY RING/U-box 86 164 - -
Bisa10g0590 477 Gene3D - 225 367 IPR011989 -
Bisa10g0590 477 FunFam RING-type E3 ubiquitin transferase 88 162 - -
Bisa10g0590 477 SUPERFAMILY ARM repeat 173 467 IPR016024 -
Bisa10g0590 477 MobiDBLite consensus disorder prediction 62 81 - -
Bisa10g0590 477 ProSiteProfiles U-box domain profile. 88 162 IPR003613 GO:0004842|GO:0016567
Bisa10g0590 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 162 IPR013083 -
Bisa10g0590 477 Gene3D - 368 472 IPR011989 -
Bisa10g0590 477 Pfam U-box domain 90 159 IPR003613 GO:0004842|GO:0016567
Bisa10g0590 477 SMART Ubox_2 92 155 IPR003613 GO:0004842|GO:0016567
Bisa10g0590 477 FunFam RING-type E3 ubiquitin transferase 372 473 - -
Bisa10g0590 477 CDD RING-Ubox_PUB 90 142 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0590 Bisa-ChrBisa10 13073984 13076510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0590 151 477 U-box Gene Family AT3G07360 58.788 5.42e-128 373