Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0449 ATGACTAGTGAGAAGTCATTTCTCCCTGTACATATTCTTTCACTGTTGGAACTAAACCTGGAGCTGTTCAACTTCAGTGACACTCAAGCAAGTACAATCCCTTTTTTCTTGAGAAAATTCAGAAGGTATTCGCATGGAGCGGAAATTTTTACAAGTCTCTTGGAAGGGGGGATTTGTGTTATGAAGTTAAGTATGGCTCAGCCTCAGAGTAACTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATTTGCTAAAAAGAAAATTACATGCATCAGCAAAAGCTTTTATGACAGAAGGAAAAGTTGCCACTGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTCTTTTGGGACATATTCATTGCAAGGACAAATGAGAAACATTCTGAGACGGCTGCAGCTTATATTGAGTCCCAGCAAATTAAGACCAGAGAGCAACAACTACAAATGCAGCAATTGCAACTAATGCAGCAGCGCAATGCACAGTTACAGCGAAGAGATCCTAATCATCCTGCTCTGGGCAGTTCCTTAAATGCCATAAATTCTGAGGGAATGTTGGGCCAGCCACCAGCAAGTGTGTTGGCCATGAAAATGTACGAGGAACGGATGAAGAACCCCCATGCTATAGATTCAGATGCATCTACAGGTCTTATTGATGCCAACAGGATGGCCCTTCTTAAATCAGCAACCAGCCATCAAGGCCAGTTGATACCAGGTAATTCAGGGAATATGTCCACTGCATTGCAGCAGATTCAGGCACGGACTCCTTTGACAACAGACATTAAAGGAGAAGTTAACTTAGGTGCTACTCAGAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCATATTTTCAGTCAAAATCTGGGTTAGGAAGTGCAGGGTTAAATCAAGGAGTCCCGGGTCTTCCATTAAAGGGTTGGCCTTTAACTGGAATTGATCAACTACGGCCTAGTTTAGGTGTACAAGTTCAGAAACCTAATATGGCAACCCAAAACCAATTTCTTTTGGCATCACAACAACAGCAGGTCCTGGCACAGGCTCAGGCACAAAATAACCTTGGAAATTCCGCTCATTATGGTGATATGGATCCTCGTAGGCTTTGTAGTCTGCCACGAGGTAGCTTGAGTGCAAAGGATGGTCAGTCCACCAGGAATGAATCATCTATGTGCTCCCAAGTGCAATCTGGTTCACCTAAGCTGATGAAGATGGCCCAGATGCAACACTCTTCATCTCAACAACAGGAGCAATTGCAGCAGCAGCAACTGCAGCAGAACAACAGAAAAAGAAAACAGCATTCTTCCTCTGGACCTGCCAATAGCACTGGTACTGCAAACACAGTGGGTCCTTCAGCTAATTCACCACCATCAACACACACACCTGGAGATGGTGTGCCAAAGAGCTTGATGATGTATGGTACAGAGGGGACAGGAGGTGTTGCATCATCTTCAAATCTGCTGCAGGAGGACATTGAAAGATATGGAGATGTTGGTGCCTTGGATGATAATGTAGAGTCCTTTCTATCAAATGATGCAGGAGACGGTGGAAGTCTGTATGGAACAATAAAACAAAGTCCAGCTGAGCACCAAAAGCAATCTTCAAAAGGATTCACCTTCGCTGAATTTAGTTGCATACGAACAATGAACAGTAAAGTTACTTGCTGTCATTTTTCTTCAGATGGAAAGTTGCTTGCTAGTGCTGGACATGACAAGAAGGTTGTCCTCTGGAACATGGACAATTTACAGACACAGAGCACTCCCGAAGAACACAAATTAGTAATTACAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCAACAGCTTCAGTTGATAAATCTGTGCGACTATGGGATGCAGCCAATCCTAGCTATTGTATGCAAGAATATAGTGGGCACAGTTCAGCTGTTATGTCTCTTGATTTCCACCCTAAGAAGACTGATCTTTTCTGTTTCTGTGACAATGACAATGAGATTCGCTATTGGAATATTGCTTCATCCTCTTGTACTCGTATGTTTAAGGGAGGTACTGCACAAGTGAGGTTTCAACCAAGACTGGGACAACTACTGGCAGCAGCTTCTGATAAAGTAGTGTCAATTTTTGATGTTGAAACTAACAATCAAATGTACTCATTCCAGGATCATTCTGAACTGGTGAACTATATATGCTGGGATGCAAATGGAGATGTCCTGGCCTCTGTGAGTCAGAACTTGGTGAAGATTTGGTCATTGACCTCAGGAGAATGCTTTCAGGAGCTCAGCTCCGGTGGAAATCAGTTTCATTCCTGTGTTTTTCATCCAAGCTATCCAACTTTATTGGTGATCGGCGGAATTTCTTCCCTGGAGTTGTGGAATATAGCAGAGAACAAAAGCATGACTATTTCAGCGCATGAGAATATAATATCTGCTTTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCAGCAAGTCATGACAGCTCTGTAAAGTTGTGGAAATAA 2511 0.4285 MTSEKSFLPVHILSLLELNLELFNFSDTQASTIPFFLRKFRRYSHGAEIFTSLLEGGICVMKLSMAQPQSNWEADKMLDVYIHDYLLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYIESQQIKTREQQLQMQQLQLMQQRNAQLQRRDPNHPALGSSLNAINSEGMLGQPPASVLAMKMYEERMKNPHAIDSDASTGLIDANRMALLKSATSHQGQLIPGNSGNMSTALQQIQARTPLTTDIKGEVNLGATQKSLPMDTSVYRQAYFQSKSGLGSAGLNQGVPGLPLKGWPLTGIDQLRPSLGVQVQKPNMATQNQFLLASQQQQVLAQAQAQNNLGNSAHYGDMDPRRLCSLPRGSLSAKDGQSTRNESSMCSQVQSGSPKLMKMAQMQHSSSQQQEQLQQQQLQQNNRKRKQHSSSGPANSTGTANTVGPSANSPPSTHTPGDGVPKSLMMYGTEGTGGVASSSNLLQEDIERYGDVGALDDNVESFLSNDAGDGGSLYGTIKQSPAEHQKQSSKGFTFAEFSCIRTMNSKVTCCHFSSDGKLLASAGHDKKVVLWNMDNLQTQSTPEEHKLVITDVRFRPNSSQLATASVDKSVRLWDAANPSYCMQEYSGHSSAVMSLDFHPKKTDLFCFCDNDNEIRYWNIASSSCTRMFKGGTAQVRFQPRLGQLLAAASDKVVSIFDVETNNQMYSFQDHSELVNYICWDANGDVLASVSQNLVKIWSLTSGECFQELSSGGNQFHSCVFHPSYPTLLVIGGISSLELWNIAENKSMTISAHENIISALAQSPVTGMVASASHDSSVKLWK 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0449 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 597 629 IPR001680 GO:0005515
Bisa10g0449 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 804 836 IPR001680 GO:0005515
Bisa10g0449 836 Pfam WD domain, G-beta repeat 718 753 IPR001680 GO:0005515
Bisa10g0449 836 Pfam WD domain, G-beta repeat 800 836 IPR001680 GO:0005515
Bisa10g0449 836 Pfam WD domain, G-beta repeat 592 629 IPR001680 GO:0005515
Bisa10g0449 836 Pfam WD domain, G-beta repeat 636 673 IPR001680 GO:0005515
Bisa10g0449 836 Pfam WD domain, G-beta repeat 554 587 IPR001680 GO:0005515
Bisa10g0449 836 ProSiteProfiles LIS1 homology (LisH) motif profile. 74 106 IPR006594 GO:0005515
Bisa10g0449 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 597 629 - -
Bisa10g0449 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 804 836 - -
Bisa10g0449 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 555 590 - -
Bisa10g0449 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 640 682 IPR001680 GO:0005515
Bisa10g0449 836 SMART WD40_4 676 712 IPR001680 GO:0005515
Bisa10g0449 836 SMART WD40_4 715 753 IPR001680 GO:0005515
Bisa10g0449 836 SMART WD40_4 590 629 IPR001680 GO:0005515
Bisa10g0449 836 SMART WD40_4 756 795 IPR001680 GO:0005515
Bisa10g0449 836 SMART WD40_4 633 673 IPR001680 GO:0005515
Bisa10g0449 836 SMART WD40_4 797 836 IPR001680 GO:0005515
Bisa10g0449 836 SMART WD40_4 551 587 IPR001680 GO:0005515
Bisa10g0449 836 Coils Coil 414 434 - -
Bisa10g0449 836 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 65 836 IPR044716 GO:0003714
Bisa10g0449 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 640 676 - -
Bisa10g0449 836 PRINTS G protein beta WD-40 repeat signature 616 630 IPR020472 -
Bisa10g0449 836 PRINTS G protein beta WD-40 repeat signature 574 588 IPR020472 -
Bisa10g0449 836 PRINTS G protein beta WD-40 repeat signature 823 836 IPR020472 -
Bisa10g0449 836 Pfam LisH 76 102 IPR006594 GO:0005515
Bisa10g0449 836 Coils Coil 155 175 - -
Bisa10g0449 836 ProSitePatterns Trp-Asp (WD) repeats signature. 574 588 IPR019775 -
Bisa10g0449 836 Gene3D - 531 691 IPR015943 GO:0005515
Bisa10g0449 836 MobiDBLite consensus disorder prediction 366 491 - -
Bisa10g0449 836 Gene3D - 692 836 IPR015943 GO:0005515
Bisa10g0449 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 555 596 IPR001680 GO:0005515
Bisa10g0449 836 SMART Lish 74 106 IPR006594 GO:0005515
Bisa10g0449 836 MobiDBLite consensus disorder prediction 386 471 - -
Bisa10g0449 836 SUPERFAMILY WD40 repeat-like 553 836 IPR036322 GO:0005515
Bisa10g0449 836 CDD WD40 559 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0449 Bisa-ChrBisa10 9691903 9704314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0449 573 821 U-box Gene Family AT2G33340 27.237 1.20e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bisa10g0449 WD40 0.015 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g0449 10 9691903 9704314 Bisa10g0449 10 9691903 9704314 ECH