Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0406 ATGCCAATGCCGAGGCGGTTATTCGGCACCCACAACAACAACCACCAAATGCCGAGGCACCTCTCCTTCAATCTCCTTCATCCTCTCTTCTTCCCCCTCCTCCTTCTTCTTCTTCTTCCTCATCTTTCATCTTCTGCAAATACAGAATCGCAAGCTCTCCTTTCATGGCTCTACACTTCCTCCTCCTTCATTCCTCCTTCAGACCCCAACCCTTGTCGCTGGTCCTTCATCAAATGCTCTCCCCAGAACTTCGTCACAGAAATCAACATCCAAGCCACAGAACTCGCCCTCCCTTTTCCTCCCAATATCTCTTCTCTTCCCTTTCTTCAAACCCTCGTCATTTCCGGTGCTAACCTCTCTGGGCCTATCTCACCCGACATCGGAAACTGCCCGGAGCTTCAAACCATTGATTTAAGCTCAAACAGTCTTGTGGGTACCATTCCTTCAACCATCGGAAAGCTTAAAAACCTCCAAGACTTGAGCTTGAACTCTAACCAGATCTCGGGGTCAATCCCTAAGGAGATTGGGGATTGTGTTAGTTTGGGAAACCTTGACATTTTCGATAATAATCTCAGTGGGGTTCTTCCTGTTGAGTTGGGGAAGCTTTCAAGCCTTGAAGTTATAAGAGCAGGAGGAAACAGTGGAATTGAGGGGAAGATTCCAGATTCTCTTGGAGATTGCAGGAATTTGAGTGTGTTGGGTCTCGCTGACACTAAAATCTCTGGCTCATTACCTGCTTCTTTGGGTAAGTTAAGGATGCTTCAGACAATCTCTATTTATAATACTTTGCTGTCTGGTGAGATTCCTCCTGAGATAGGGAATTGTTCTGAACTTGTGAATTTGTTCTTGTATGAGAATGAGTTGTTTGGTTCAATTCCAAAAGAGCTAGGTAAGCTTCAGAAGCTTCAGAAAATGTTACTATGGCAGAACCATTTTTCTGGAAGCATACCTCAGGAGATTGGTGACTGTAGAAAGTTGATGTTTTTTGATGTTTCCTTAAACTCTCTGTCTGGAAACATACCAATAACTTTTGGGAACCTCACAAATCTTGAAGAGCTTATGTTGAGTAACAATAACATATCTGGTTCAATCCCACCTGTGATGTCCAATCTTTTGAACCTTGTACAGCTTCAGTTAGATACTAATCAGATTTCGGGTTTGATTCCGGCTGAACTCGGGAAGTTGAAGAAGCTTACTGTCTTTTTCGCTTGGCAGAATAAGCTTGTAGGAAGCATTCCTTCTGAACTGGGTGGTTGTACAAGCCTAGAAGCTTTAGATTTGTCATATAATGCTCTCACTGATAGCTTACCTCCTAGCTTGTTTCAGCTTCGCAATTTGACTAAGCTTCTAGTAATATCGAACCATATATCTGGTACCATTCCTCAGGAGATTGGTAACTGCAGTTCTCTCATTCGGCTTCGGCTTTTGAACAATAGAATAGGCGGAGAGATACCAAGAGAACTTGGTTATCTCGATAACCTTAGCTTCCTTGATCTGTCAGAGAATAATCTCACTGGGGCTGTACCAGTTGAGCTTGGAAATTGCAAGGCATTGCAAATGTTGAACCTCAGCAATAACTCGCTTTCGGATGATTTGCCTATCTCTTTGTCTTCTCTCACAAGCCTTGAGGTTTTAGATGTTTCTCTGAATCACTTTTCTGGGGAAATTCCAGGGAGTATTGGCCAACTAACTTCCCTTCTCAGGCTCATCCTTAGCAAAAACTCGTTCTCTGGATCGATTCCCTCATCGCTCGGCCTCTGTTCAGGTCTTCAACTTCTTGATCTTAGTAGCAACAACCTCTCGGGAAGCATCCCATCGGAATTATTTGAAATTGAAGCACTTGATATTGCTTTAAACTTGAGTCATAATGCATTATCTGGAATAATCCCTCCACAGATTTCTTCTCTGAACAAGCTTTCAGTTCTAGACCTTTCGCACAACAAGCTTGAAGGTGACTTGGTGGCGTTTTCGGGACTCGAGAATCTTGTTTCGCTCAACGTCTCCTACAACAAGTTCACTGGTTATCTTCCAGACCTCAAGTTATTCCACCAGTTATCGTCAACAGATCTGGAAGGAAATGACAGGCTTTGTCCAAACGGGCGTGATTCGTGTTTCTTAAGTAGTTCTGCAATGACAAAAATGCTAAGTAATAGCGATTCTAAAAAGGCAGAGAGGATCAAAATAGGCATAGGATTGCTCAGTGCCTTCACTGTTGCAATGGCAATCTTTGGAGTTTTTACCGTCTTTCGAGTGAGGAAAATGGCTCAAGACGACAATGATTCTGAAATTGGTGGGGATTCGTGGCCTTGGCAGTTCACACCATTCCAGAAACTGAACTTCTCTGTGGACCAAGTCCTAAGATGTCTGGTTGACTCCAATGTAATAGGAAAGGGATGTTCCGGTGTTGTTTATCGCGCAGAAATGGAAAATGGCGACGTTATTGCTGTGAAGAAGCTATGGCCAACAACAATGGCTACAAAATATGATTGTCAAAATGACAAGCTAGCAGTCCATGGAGGAGGAGTTCGTGATTCCTTTTCAGCTGAGGTTAAAACCCTTGGCTCCATCCGGCACAAGAACATTGTGAGGTTCCTAGGATGCTGCTGGAACCGAAATACTAGGCTGCTTATGTATGACTACATGCCAAATGGGAGCTTAGGAAGTCTGCTTCATGAAAGAAGTGGAGGAAACTGCTTAGAGTGGGACATCCGATACCGGATTTTGCTCGGGGCAGCTCAGGGCTTGGCTTATCTTCACCATGATTGTGTTCCTCCCATTGTTCATAGGGACATTAAGGCCAACAATATTCTTATAGGTCCTGAATTTGAACCATACATTGCTGATTTTGGGCTTGCTAAACTTGTTGATGATGGAGATTTTGCAAGATCCTCAAGCACACTTGCTGGTTCATATGGCTACATTGCTCCTGAGTATGGATACATGATGAAGATAACAGAGAAAAGCGATGTGTACAGCTATGGCATTGTGGTGTTAGAATTGCTAACAGGGAAGCAACCCATTGACCCAACAATCCCAGACGGGCTCCACATCGTTGATTGGGTGAGACAGAAGAGATCCAAAACCGAAGTTCTAGACCCAGGCCTGTGTGCCAGGCCTGAACCAGAAATAGATGAGGTATTGCAGACCTTAGGGGTGGCTCTGCTCTGTGTGAACCCTAGTCCGGATGATAGGCCAACCATGAAGGATGTGACTGCAATGCTCCAAGAGATCAGGGTGGAGAGGGAGGAGTATCAGAAAGTTGACATGCTTCTTCACGGATCTTCTGCAAATAATCAACAGGAAGAAGATGGTAATGGCGATAATAGTCATTCAAGTGAAGAGCCAAGAGGGAAGGTGGTTAGACATTCATACCCAATAAGTGGAAGCAACACTAGGTTTTCTGCCTCTCTTTTGATCTCTCCTTCTTCCTCCAATTCTAAAGTGACATTGAAATAG 3456 0.4395 MPMPRRLFGTHNNNHQMPRHLSFNLLHPLFFPLLLLLLLPHLSSSANTESQALLSWLYTSSSFIPPSDPNPCRWSFIKCSPQNFVTEINIQATELALPFPPNISSLPFLQTLVISGANLSGPISPDIGNCPELQTIDLSSNSLVGTIPSTIGKLKNLQDLSLNSNQISGSIPKEIGDCVSLGNLDIFDNNLSGVLPVELGKLSSLEVIRAGGNSGIEGKIPDSLGDCRNLSVLGLADTKISGSLPASLGKLRMLQTISIYNTLLSGEIPPEIGNCSELVNLFLYENELFGSIPKELGKLQKLQKMLLWQNHFSGSIPQEIGDCRKLMFFDVSLNSLSGNIPITFGNLTNLEELMLSNNNISGSIPPVMSNLLNLVQLQLDTNQISGLIPAELGKLKKLTVFFAWQNKLVGSIPSELGGCTSLEALDLSYNALTDSLPPSLFQLRNLTKLLVISNHISGTIPQEIGNCSSLIRLRLLNNRIGGEIPRELGYLDNLSFLDLSENNLTGAVPVELGNCKALQMLNLSNNSLSDDLPISLSSLTSLEVLDVSLNHFSGEIPGSIGQLTSLLRLILSKNSFSGSIPSSLGLCSGLQLLDLSSNNLSGSIPSELFEIEALDIALNLSHNALSGIIPPQISSLNKLSVLDLSHNKLEGDLVAFSGLENLVSLNVSYNKFTGYLPDLKLFHQLSSTDLEGNDRLCPNGRDSCFLSSSAMTKMLSNSDSKKAERIKIGIGLLSAFTVAMAIFGVFTVFRVRKMAQDDNDSEIGGDSWPWQFTPFQKLNFSVDQVLRCLVDSNVIGKGCSGVVYRAEMENGDVIAVKKLWPTTMATKYDCQNDKLAVHGGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGGNCLEWDIRYRILLGAAQGLAYLHHDCVPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLELLTGKQPIDPTIPDGLHIVDWVRQKRSKTEVLDPGLCARPEPEIDEVLQTLGVALLCVNPSPDDRPTMKDVTAMLQEIRVEREEYQKVDMLLHGSSANNQQEEDGNGDNSHSSEEPRGKVVRHSYPISGSNTRFSASLLISPSSSNSKVTLK 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0406 1151 SUPERFAMILY L domain-like 64 318 - -
Bisa10g0406 1151 Coils Coil 1067 1087 - -
Bisa10g0406 1151 SMART LRR_typ_2 636 658 IPR003591 -
Bisa10g0406 1151 SMART LRR_typ_2 419 443 IPR003591 -
Bisa10g0406 1151 SMART LRR_typ_2 347 371 IPR003591 -
Bisa10g0406 1151 SMART LRR_typ_2 659 681 IPR003591 -
Bisa10g0406 1151 SMART LRR_typ_2 539 563 IPR003591 -
Bisa10g0406 1151 SMART LRR_typ_2 154 178 IPR003591 -
Bisa10g0406 1151 SMART LRR_typ_2 299 323 IPR003591 -
Bisa10g0406 1151 SMART LRR_typ_2 491 515 IPR003591 -
Bisa10g0406 1151 SMART LRR_typ_2 587 611 IPR003591 -
Bisa10g0406 1151 SUPERFAMILY Protein kinase-like (PK-like) 780 1075 IPR011009 -
Bisa10g0406 1151 SMART LRR_sd22_2 395 427 - -
Bisa10g0406 1151 SMART LRR_sd22_2 347 373 - -
Bisa10g0406 1151 SMART LRR_sd22_2 491 512 - -
Bisa10g0406 1151 SMART LRR_sd22_2 636 661 - -
Bisa10g0406 1151 SMART LRR_sd22_2 154 175 - -
Bisa10g0406 1151 MobiDBLite consensus disorder prediction 1106 1120 - -
Bisa10g0406 1151 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 295 403 - -
Bisa10g0406 1151 MobiDBLite consensus disorder prediction 1124 1151 - -
Bisa10g0406 1151 Gene3D Phosphorylase Kinase; domain 1 774 880 - -
Bisa10g0406 1151 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Bisa10g0406 1151 Pfam Leucine rich repeat 618 672 IPR001611 GO:0005515
Bisa10g0406 1151 SUPERFAMILY RNI-like 267 577 - -
Bisa10g0406 1151 FunFam Predicted protein 196 294 - -
Bisa10g0406 1151 SUPERFAMILY L domain-like 533 698 - -
Bisa10g0406 1151 Gene3D Ribonuclease Inhibitor 244 342 IPR032675 -
Bisa10g0406 1151 PRINTS Leucine-rich repeat signature 636 649 - -
Bisa10g0406 1151 PRINTS Leucine-rich repeat signature 494 507 - -
Bisa10g0406 1151 ProSiteProfiles Leucine-rich repeat profile. 349 371 IPR001611 GO:0005515
Bisa10g0406 1151 FunFam Nuclear pore complex protein NUP107 37 195 - -
Bisa10g0406 1151 Pfam Protein kinase domain 792 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa10g0406 1151 Gene3D Ribonuclease Inhibitor 37 153 IPR032675 -
Bisa10g0406 1151 Gene3D Ribonuclease Inhibitor 436 531 IPR032675 -
Bisa10g0406 1151 Gene3D Ribonuclease Inhibitor 343 435 IPR032675 -
Bisa10g0406 1151 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 772 880 - -
Bisa10g0406 1151 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 421 708 - -
Bisa10g0406 1151 ProSitePatterns Protein kinases ATP-binding region signature. 795 818 IPR017441 GO:0005524
Bisa10g0406 1151 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 311 1074 - -
Bisa10g0406 1151 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 881 1092 - -
Bisa10g0406 1151 ProSiteProfiles Protein kinase domain profile. 789 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa10g0406 1151 SMART serkin_6 789 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa10g0406 1151 MobiDBLite consensus disorder prediction 1096 1151 - -
Bisa10g0406 1151 Gene3D Ribonuclease Inhibitor 617 704 IPR032675 -
Bisa10g0406 1151 Gene3D Ribonuclease Inhibitor 154 243 IPR032675 -
Bisa10g0406 1151 Gene3D Ribonuclease Inhibitor 532 616 IPR032675 -
Bisa10g0406 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 926 938 IPR008271 GO:0004672|GO:0006468
Bisa10g0406 1151 Gene3D Transferase(Phosphotransferase) domain 1 881 1098 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0406 Bisa-ChrBisa10 8833400 8837849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0406 44 1101 Receptor kinase-like Gene Family AT5G56040 46.785 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bisa10g0406 Pkinase 5.8e-39 CL0016