Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0395 ATGGACGACGATACGGCTTCACTGCTTCGAAAGCTGATCCTCATTGTCAACGAAATCGCTGGCATTTCCGTCTTCAAATGCGTGATCAAGAAGCAATGCCGCCATCTCAGCCGGAGAATCAGGTTCTTGGCGCCTTTGTTCGAAGATTTGATGGACATTAAGGACGCGATTCCTGAACAAGCAATTCTCTCTCTGGCTTCCTTCAGAGAAGCTCTGGAGGAGGCCAAGGATTTGCTCGAGTTTGGTGGAAATGGAAGTCAAATTTATATGATACTGGAGAGAGGGCAAATTAAGGGCAAATTTAATAACCTCTCCCTTTCTTTTGAACAAGCTATAAGCAATATCTCCTCTTACAATCTTGATCTTTCTGAAGAAGTTAAAGAGCAGGTTGCACTTGTGAATGATCAGTTTGTAAGAGCCAGGGCCTGCTTTGATTCACCTAGCGTAGAACTATATGGTCACCTGTTGTCAATTTTGAACCCGAGCTATGATGTGAATTCTAACCCAGTTGTTCTGCATCTAATAAGTGAAAAGCTACAATTTATAAATGTGGAAGACATCAAACAAGAGTCAATAGCTCTGCAGAAGATGGTTGCGACCAAGGGTGGTGATCTGGAGAAAAGCACACGTGACATGTCAATAGTACTGAAAAAAATTGAAGATTTCATGTTGACAGAATCTTCAAATGTTGTTTTAAGTGCTAGTGAGGATTGTCTTTCTCATTTTGATAAGCCATACAGCAAGTTGTGTCCTCAATCACTAGCTATACCTGATGAATTTCGCTGCCCAATATCACTTGAATTGATGAAAGATCCTGTTATCATTTGTACAGGGCAGACTTATGATCGAGCTTGCATAAAGAAATGGTTTAGAGCAGGGCATGGAACATGTCCGAAGACACAGCAGATTCTTTCCAGCACCATCCTAACACCCAACCATGTATTGTATAGCCTGATATCCAGTTGGTGTGAGGCAAATGGGTTGGAAGCACCTAAAAGATTAGGGAACTTATGCCTCTGTAAGGAAAATTTGGATGGCTCTTCTGAATTTATAGAGGTTGATACTATACTGAGGAAACTTACTTCCAATTACATTGAAGATCAGCGACTTGCTGCAGGTGAGCTTCGTCTTCTTGCTAAAAGCAGTGGTCAAAATCGCAAAATGATTGCTGAAGCTGGTGCTGTACCCTTACTTGTTGGTCTCCTTAATGTGCCTGACTCTCGCACCCAAGATCATGCAGTGACTGCTCTTCTGAACTTATCCATATGTGAGGATAATAAAGAGTGTATCATGGCTTCTGATGCTGTTTCTGGGATCCTTAATGTGTTAAAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTCTTATAAATGAGTACAAAGCAACAATCGGTGCATCTGGAGCAATCCCAGCACTAGTTAAACTTTTATATGAGGGTAGCCGAAGAGGGAAGTTGGATTCTGCAGCAGCATTATTCAATATCTGTTTATATCAAGGGAACAAGAGACGTGCAGTTAGGGCTGGTGTAGTGCCCAAGTTGATGGAAATGCTAACAGAACCTGGAGGAGAGATGATAGATGAGGCATTGTCAATTATGTCACTACTAGCTAGCCACCCTTATGGAAAGGCAGAAATTGGGTCTTTAAATGCTGTGCCTACTTTAGTGGACTTACTTAAAGATGGAACTCCTAGGAACAGAGAGAATGCAACTGCAGTGTTGGCACACCTCTGTGATGAAGATCCTCAACATCTGTCAATGGTCATGTCACTTGGGGTGATTAATTCTCTCTTGGACCTAGCAGAAAATGGCACACAGAGGGGCAAGTGCAAAGCTACTCAGTTACTGGAGCTTGTTGGCAATTTTTCAGAGAATTGTGAACATGCTAGGCAAACTGTCAGATAG 1926 0.4232 MDDDTASLLRKLILIVNEIAGISVFKCVIKKQCRHLSRRIRFLAPLFEDLMDIKDAIPEQAILSLASFREALEEAKDLLEFGGNGSQIYMILERGQIKGKFNNLSLSFEQAISNISSYNLDLSEEVKEQVALVNDQFVRARACFDSPSVELYGHLLSILNPSYDVNSNPVVLHLISEKLQFINVEDIKQESIALQKMVATKGGDLEKSTRDMSIVLKKIEDFMLTESSNVVLSASEDCLSHFDKPYSKLCPQSLAIPDEFRCPISLELMKDPVIICTGQTYDRACIKKWFRAGHGTCPKTQQILSSTILTPNHVLYSLISSWCEANGLEAPKRLGNLCLCKENLDGSSEFIEVDTILRKLTSNYIEDQRLAAGELRLLAKSSGQNRKMIAEAGAVPLLVGLLNVPDSRTQDHAVTALLNLSICEDNKECIMASDAVSGILNVLKNGSMEARENAAATFFSLSLINEYKATIGASGAIPALVKLLYEGSRRGKLDSAAALFNICLYQGNKRRAVRAGVVPKLMEMLTEPGGEMIDEALSIMSLLASHPYGKAEIGSLNAVPTLVDLLKDGTPRNRENATAVLAHLCDEDPQHLSMVMSLGVINSLLDLAENGTQRGKCKATQLLELVGNFSENCEHARQTVR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0395 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 475 517 IPR000225 GO:0005515
Bisa10g0395 641 FunFam RING-type E3 ubiquitin transferase 255 329 - -
Bisa10g0395 641 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Bisa10g0395 641 SUPERFAMILY ARM repeat 334 631 IPR016024 -
Bisa10g0395 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Bisa10g0395 641 Gene3D - 336 492 IPR011989 -
Bisa10g0395 641 CDD MLKL_NTD 30 136 - -
Bisa10g0395 641 Gene3D - 494 641 IPR011989 -
Bisa10g0395 641 Pfam Armadillo/beta-catenin-like repeat 549 586 IPR000225 GO:0005515
Bisa10g0395 641 Pfam Armadillo/beta-catenin-like repeat 384 421 IPR000225 GO:0005515
Bisa10g0395 641 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Bisa10g0395 641 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Bisa10g0395 641 Gene3D - 5 118 IPR036537 GO:0007166
Bisa10g0395 641 PANTHER U BOX DOMAIN-CONTAINING 30 626 - -
Bisa10g0395 641 CDD RING-Ubox_PUB 257 309 IPR045210 -
Bisa10g0395 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 329 IPR013083 -
Bisa10g0395 641 SUPERFAMILY RING/U-box 255 331 - -
Bisa10g0395 641 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Bisa10g0395 641 FunFam RING-type E3 ubiquitin transferase 339 632 - -
Bisa10g0395 641 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Bisa10g0395 641 SMART arm_5 505 545 IPR000225 GO:0005515
Bisa10g0395 641 SMART arm_5 464 504 IPR000225 GO:0005515
Bisa10g0395 641 SMART arm_5 423 463 IPR000225 GO:0005515
Bisa10g0395 641 SMART arm_5 382 422 IPR000225 GO:0005515
Bisa10g0395 641 SMART arm_5 546 586 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0395 Bisa-ChrBisa10 8117041 8127297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0395 1 632 U-box Gene Family AT3G46510 51.805 0.0 655