LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa10g0376	ATGGGTGCGTGCTGGAGCAATCGGATAAAGGCCGTGAGTCCTTCCAGTACAGGGTTCACTTCAAGAAGTGTTAGCAGGGATGGCTGTGACAATAGCTCAAGTAGCAGGAACTCATCGTCCTCGATACCCATAACTCCTCGGAGTGAGGGTGAGATCTTACAATCTTCCAATTTGAAGAGCTTCAACTACAGTGAACTTAAAACAGCCACAAGAAACTTCCGGCCAGATAGTATCTTAGGAGAAGGTGGATTTGGTTCAGTTTTCAAAGGGTGGATTGATGAGAATTCCCTCATTGCTACCAGGCCAGGAGTAGGCATGGTTATTGCTGTGAAGAGGCTTAAACAAGATGGCTTCCAGGGTCACAAGGAATGGCTGGCTGAAATCAACTACCTTGGTCAACTGCGTCATCCTAATCTTGTCAAATTGATAGGGTACTGCTTGGAGGATGAGCATCGACTTCTAGCCTACGAATTTATGTCTAAGGGCAGTGTGGAGAATCATCTGTTCCGAAGAGGTTCGCATTTTCAGCCACTTTCTTGGAGCTTGCGAATGAAAATAGCCCTTGAGGCTGCCAGGGGTCTTGCGTTTCTCCACAGTACAGAACCTAAAGTCATATACCGTGATTTCAAGACTTCTAATATCCTTCTTGATACTGACTATAATGCCAAGCTTTCTGACTTTGGGTTGGCTAGAGATGGGCCGATGGGTGATAAGAGTCATGTCTCAACTAGGGTCATCGGAACCCATGGATATGCAGCACCAGAGTACTTAGCGACAGGTCACCTCACTACTAAGAGTGATGTATATAGTTTTGGAGTAGTTCTTCTGGAAATGTTATCTGGAAGACGAGCCATAGACAAGAACCGGCCATCTGGAGAACATAACCTTGTTGAGTGGGCAAAACCTTACCTATCTCATAAACGTAGATCCTTTCGTGTTATGGATACCCGTATTGAAGGACAGTATTCCCCAAGTCGAGCTCAAAGGGCAGCAGCGCTTGCTTTTCAGTGTCTTTCCGTAGATGCTAAATTCAGGCCAAACATGGATGAGGTAGTAAGAACATTGGAGCAGCTTCAGGACTCAAAGGACGCACCAAAAAGTGCCAATAAGAAAGATCATTGTGTACAAGGTGCCAGCCATAGCCATCCCAAGGGCTTCCCTGCGTCCCTCAAAGACGTTGCAGGAGATAAACCCGTAAAGACTGCCTATCCCAGGCCTTCTGCTTCTCCCCTTTTTTCTTAA	1242	0.4622	MGACWSNRIKAVSPSSTGFTSRSVSRDGCDNSSSSRNSSSSIPITPRSEGEILQSSNLKSFNYSELKTATRNFRPDSILGEGGFGSVFKGWIDENSLIATRPGVGMVIAVKRLKQDGFQGHKEWLAEINYLGQLRHPNLVKLIGYCLEDEHRLLAYEFMSKGSVENHLFRRGSHFQPLSWSLRMKIALEAARGLAFLHSTEPKVIYRDFKTSNILLDTDYNAKLSDFGLARDGPMGDKSHVSTRVIGTHGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGRRAIDKNRPSGEHNLVEWAKPYLSHKRRSFRVMDTRIEGQYSPSRAQRAAALAFQCLSVDAKFRPNMDEVVRTLEQLQDSKDAPKSANKKDHCVQGASHSHPKGFPASLKDVAGDKPVKTAYPRPSASPLFS	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa10g0376	413	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	204	216	IPR008271	GO:0004672\|GO:0006468
	Bisa10g0376	413	Pfam	Protein kinase domain	76	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa10g0376	413	SUPERFAMILY	Protein kinase-like (PK-like)	50	361	IPR011009	-
	Bisa10g0376	413	Gene3D	Transferase(Phosphotransferase) domain 1	159	382	-	-
	Bisa10g0376	413	FunFam	Serine/threonine-protein kinase BIK1	39	158	-	-
	Bisa10g0376	413	ProSiteProfiles	Protein kinase domain profile.	73	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa10g0376	413	FunFam	Probable serine/threonine-protein kinase PBL8	159	374	-	-
	Bisa10g0376	413	MobiDBLite	consensus disorder prediction	13	49	-	-
	Bisa10g0376	413	PANTHER	OS01G0588500 PROTEIN-RELATED	34	359	-	-
	Bisa10g0376	413	Gene3D	Phosphorylase Kinase; domain 1	48	158	-	-
	Bisa10g0376	413	ProSitePatterns	Protein kinases ATP-binding region signature.	79	111	IPR017441	GO:0005524
	Bisa10g0376	413	MobiDBLite	consensus disorder prediction	358	413	-	-
	Bisa10g0376	413	MobiDBLite	consensus disorder prediction	358	378	-	-
	Bisa10g0376	413	CDD	STKc_IRAK	79	358	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa10g0376	Bisa-ChrBisa10	7668086	7671152	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa10g0376	22	364	Glycoside Hydrolase	AT3G07070	45.833	7.39e-106	317

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Bisa10g0376		Pkinase	1.6e-45	CL0016