Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0357 ATGGCTTCAGTTGGATCTTCCTATTGGTGCTACAGATGCAATCAGTTCATTAGGGTTCGAATTGGGGCTGAAGACTCGTTGCTTTGCCCTGATTGTCGGTCTGGGTTTATAGAAGAAATCAGGACTCGTACTCACTCTCCTTTCCGTCGATTCCCGTCACCGGCAATGTACGTCGATGATGAGTCTAGCACCGAGCAAGGCGCAAGCCCAAGACTCCGTCGCGGCCGGCGGAACGCCGGCGATCGGTCTCCTTTTAACCCCGTTATTGTTCTCTCTGGAGCCGCAGATGGCGGCGGCGGCGGTGGAAATGAAGGGATTGGAGCTGAAAGAGGAAACTTTGAGCTCTATTATAATGAAGGTACTGGTTCGGGTCTGCGGCCCTTACCTGCAAGTGTCACGGAGTTCTTGATGGGTGCTGGATTCGACCACCTTCTTGACCAGTTATCTCAATTAGAAGTCACCGGGATCGGACGATTGCACCAACCACCGGCATCGAAAGCTGCAATTGAATCGATGCCTATCATCAAGATTGTTGCTACGCATGTTTCCGCGGAATCACATTGTGCAGTTTGTAAAGAACCGTTCGAACTTCATACGGATGCCCGTGAAATGCCTTGTAAGCACATTTACCATTCTGATTGTATCCTTCCATGGCTTTCAATTCGTAATTCCTGTCCTGTTTGTCGCCATGAGTTACCTACTGAGCTGCGTGGGAGTAGTAGTGGAACAAACTCTCCAATGTCTGATGGAGGAAGGGATGATCATACTGTGGGATTAACTATATGGAGACTACCTGGTGGTGGATTTGCTGTAGGGAGGTTCACTGGGGGAAGAAGAGCCGCAGAACGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTTAATAGTGTGGGTGTTCCAAGAAGGATATCTTGGGAAACGAGTGTAAGAAGATCAAGGGAGACTCGGGGACTAGGAAGTGCATTCCGGAACTTCTTCTCATATTTTGGGAGGCTTAGAAATTCTTTCTCTCGTTCCTCCAGTACTGATTCAAATCTGGGTCGAATAAGTCGATCGAACACAGTATTGTCTAGATTCTCAAGGAGAAGGCGCAACTAG 1104 0.4837 MASVGSSYWCYRCNQFIRVRIGAEDSLLCPDCRSGFIEEIRTRTHSPFRRFPSPAMYVDDESSTEQGASPRLRRGRRNAGDRSPFNPVIVLSGAADGGGGGGNEGIGAERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLSQLEVTGIGRLHQPPASKAAIESMPIIKIVATHVSAESHCAVCKEPFELHTDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTELRGSSSGTNSPMSDGGRDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSVGVPRRISWETSVRRSRETRGLGSAFRNFFSYFGRLRNSFSRSSSTDSNLGRISRSNTVLSRFSRRRRN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0357 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 63 233 - -
Bisa10g0357 367 Pfam Protein of unknown function (DUF1117) 257 362 IPR010543 -
Bisa10g0357 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 235 IPR013083 -
Bisa10g0357 367 SUPERFAMILY RING/U-box 168 235 - -
Bisa10g0357 367 Pfam Ring finger domain 187 229 IPR001841 -
Bisa10g0357 367 SMART ring_2 188 228 IPR001841 -
Bisa10g0357 367 MobiDBLite consensus disorder prediction 52 85 - -
Bisa10g0357 367 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Bisa10g0357 367 Pfam zinc-ribbon 7 40 IPR039525 GO:0061630
Bisa10g0357 367 CDD RING-H2_RNF126-like 188 229 - -
Bisa10g0357 367 MobiDBLite consensus disorder prediction 66 80 - -
Bisa10g0357 367 FunFam E3 ubiquitin-protein ligase RING1-like 150 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0357 Bisa-ChrBisa10 6969914 6971017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0357 127 242 C3H Transcription Factor Family AT5G01980 43.103 3.94e-27 110