Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0221 ATGAAAGTGTTGGCCAGAATTGATTTTCTCTATCTCAATTCGCTGATGGAAATGGCTTCTGGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTACAGTGCTCGAAGAGCCGCAGTTGTTCGTGCTTTGACTCAAGATGTGGACGAATTCTACGGGCTCTGTGATCCAGAAAAGGAGAACTTGTGCCTATATGGACATACAAATGAAACCTGGGAAGTAACTCTACCAGCAGAGGAGGTTCCCCCCGAGCTTCCTGAGCCGGCTCTTGGGATCAATTTTGCTAGAGATGGCATGAATCGCAGGGACTGGCTTTCTCTAGTTGCTGTCCACAGTGATTCATGGCTGCTTTCTGTGGCTTTTTATCTTGGAGCCCGTCTTAACCGCAATGAGAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCCACTGTATTTGAAGTTGTGACTGAGAGAAAGCCAATAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCACGTTAAAAGCAATCCAAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCACAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAACTACAATGCAGATGAATTTTGGATTGGCTGCGATATATGTGAGAGGTGGTTCCACGGGAAATGTGTGAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATATAAATGCCCTTCCTGCATGAGGAGGGGCAAGCCCTAG 762 0.4711 MKVLARIDFLYLNSLMEMASGPRTVEEIFKDYSARRAAVVRALTQDVDEFYGLCDPEKENLCLYGHTNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSSDGHVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRGKP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0221 253 Pfam PHD-finger 201 249 IPR019787 -
Bisa10g0221 253 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Bisa10g0221 253 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Bisa10g0221 253 PANTHER CPG BINDING PROTEIN 22 249 IPR045104 GO:0006355|GO:0042393
Bisa10g0221 253 Pfam Alfin 24 149 IPR021998 GO:0006355|GO:0042393
Bisa10g0221 253 SUPERFAMILY FYVE/PHD zinc finger 189 251 IPR011011 -
Bisa10g0221 253 MobiDBLite consensus disorder prediction 155 190 - -
Bisa10g0221 253 SMART PHD_3 200 248 IPR001965 -
Bisa10g0221 253 CDD PHD_AL_plant 200 250 IPR044104 -
Bisa10g0221 253 FunFam PHD finger alfin-like protein 193 249 - -
Bisa10g0221 253 MobiDBLite consensus disorder prediction 155 186 - -
Bisa10g0221 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 248 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0221 Bisa-ChrBisa10 4151298 4156588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0221 19 247 Alfin-like Transcription Factor Family AT5G05610 78.261 1.75e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bisa10g0221 Alfin 1.1e-67 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g0221 10 4151298 4156588 Bisa06g0214 06 5478269 5482668 CCT
Bisa06g0273 06 6520814 6521203 Bisa10g0221 10 4151298 4156588 CCT