Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0078 ATGGCAATTTCTCCTCAGACCTTCCCCAGCCGGAAACGACGGCCTTCGGCGGGGTCGTTTATGTCTCCCAGACTCACCGAACTCGACCTTCTTCACTCTCTGCTTCACCTAACCCACGAGATTGCCTCTCTCAAGCCAATCCAATTCCTTCTCAAACGCAACTCCACTTCCATAATTCGCAAATCCAATCTCCTCAGCGTTTTATTCGAAGAGGTGGCTCGATGCTCCGGTTCTCTCTCCTCGCAATCCCTCATGCTCTGTTTCGAAGAAATGTATATAGTTTTGCAGCGAATCAAAACCCTCCTCGAGGATTGCGCGAACGGAAGCAAGATGTGGCTGTTGATGCAGAACGAATCAATCGCCGACAATTTCCACAAACTCACCGCGGATTTGTCGACGCTGATGGATATCATCCCGGCGAATGAGCTGGAATTAAGCGACGACGTTCGAGAGCTTGTGATTCTGATCAGAAAACAATGTTCCGAATCGAAGGCTGTTGTGGATCCGAGAGACAACGAGCTCAGGCACGAGGTCGTTACGATGCTTGATCGGATCAAGCTAGAGATCGTCCCCGATCATACCAAGCTCGCGGAGATTTTCGAGAGGTTAGAGATCCGAGATTCCTCGAGTTGCAGAGCGGAGATTGAGAGTTTAGAGGAGGAGATTCAGAATCGGAACGAGGAGCAATCGAAATCGGAGATTGTCGCGTTGATCGGACTCGTGAGATACGCGAAATGCGTTCTCTTCGGAGCTTCCACTCCGTCTCCTTCCTCCTCCTCCTCCTCCGACGTACAGCGGCGGAAACAGCCGTCGGACATCGTGGTTCCGGTAGACTTCAGGTGTCCGATCAGCCTTGAGCTGATGCGGGACCCAGTCGTCGTGGCAACAGGTCAGACGTATGATCGTGAGTCCATCAAGCTGTGGTTCGAATCAGGACACAACACGTGTCCCAAGACCGGTCAAACCCTGGCCCACACAGACCTCATCCCTAACCGTGCCTTGAAGAACTTCATAGCCGTATGGTGCCGCGAGCAAAAGATCCTATTCGAAACGGCGGGCAGTAACGAGAAAACTAACGGCGTTATCCTCAACAAAGCCGCTTTGGAAGCTACTAGAATGACGGCGTCGTTTCTGGTCAACAAGCTGTCTCTTTCTCCGTCCATGGAGGCCGCAAACGGCGTCGTTTATGAGCTCCGTGCCTTGGCCAAAACAGACTCCGATAGCCGCGCCTGCATTGCCGAAGCTGGAGCCATACCTCTTCTGGTTCGCTACCTAAGTTTCCCCGTCGGCTCGCAGAACCCGAACCTACAGGTTAACGCCGTCACAACGATCCTCAACCTCTCCATCCTCGAGGCGAACAAAACGAGGATCATGGAGACTGACGGAGCTTTGAACGGTGTCATCGAGGTCCTTCGCTCCGGTGCCACGTGGGAGGCGAAGGCCAACGCGGCAGCCACAATATTCAGCCTCTCAGGCGTTCACCCGTACAGGAAAAGGCTCGCGAGGAAGACACGTGTCATGCGGGGGTTGATTGACTTGGCAAAGAGTGGGCCCACCGGTGCCAAGAGGGATGCTTTGGTGGCCATTTTGACTCTAGCGGCGGATAGAGAGACGGTGGCGCGGTTGGTGGAAGCTGGGGTGGTGGAGATGACGGCGGAGGTGATGGACGGGTTGCCGGAGGAGGCGGTGACGATTCTTGAGATGGTGGTGAAGCGGGGTGGGTTGGTGGCCGTGGCCGCCGCCTACGGCAGCATTAAGAAATTGGGAGTGATATTGAGGGAAGGCTCCGACAGAGCGAGGGAGAGTGCGGCGGCGACCCTCGCCACCATGTGTCGGAAGGGAGGATCGGAGGTAGTGGGGGAGCTGGCGGCGATACCGGGAATTGAAAGGGTAATATGGGAATTGATGGCGATTGGGACTTTAAGAGGGAAAAGAAAAGCAGCCACGTTGTTGAGGATTCTCAGGCGATGGGCGGCGGGGCTGGACGGCGGCGGGTCAACGGAAGGGTTTTCAACAACTATTACATCGTCAACAACAATGGTTTCAACTCAATAG 2055 0.547 MAISPQTFPSRKRRPSAGSFMSPRLTELDLLHSLLHLTHEIASLKPIQFLLKRNSTSIIRKSNLLSVLFEEVARCSGSLSSQSLMLCFEEMYIVLQRIKTLLEDCANGSKMWLLMQNESIADNFHKLTADLSTLMDIIPANELELSDDVRELVILIRKQCSESKAVVDPRDNELRHEVVTMLDRIKLEIVPDHTKLAEIFERLEIRDSSSCRAEIESLEEEIQNRNEEQSKSEIVALIGLVRYAKCVLFGASTPSPSSSSSSDVQRRKQPSDIVVPVDFRCPISLELMRDPVVVATGQTYDRESIKLWFESGHNTCPKTGQTLAHTDLIPNRALKNFIAVWCREQKILFETAGSNEKTNGVILNKAALEATRMTASFLVNKLSLSPSMEAANGVVYELRALAKTDSDSRACIAEAGAIPLLVRYLSFPVGSQNPNLQVNAVTTILNLSILEANKTRIMETDGALNGVIEVLRSGATWEAKANAAATIFSLSGVHPYRKRLARKTRVMRGLIDLAKSGPTGAKRDALVAILTLAADRETVARLVEAGVVEMTAEVMDGLPEEAVTILEMVVKRGGLVAVAAAYGSIKKLGVILREGSDRARESAAATLATMCRKGGSEVVGELAAIPGIERVIWELMAIGTLRGKRKAATLLRILRRWAAGLDGGGSTEGFSTTITSSTTMVSTQ 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0078 684 SMART arm_5 405 449 IPR000225 GO:0005515
Bisa10g0078 684 MobiDBLite consensus disorder prediction 1 20 - -
Bisa10g0078 684 SUPERFAMILY ARM repeat 378 654 IPR016024 -
Bisa10g0078 684 CDD RING-Ubox_PUB 276 328 IPR045210 -
Bisa10g0078 684 Gene3D - 374 519 IPR011989 -
Bisa10g0078 684 Gene3D - 27 139 IPR036537 GO:0007166
Bisa10g0078 684 CDD MLKL_NTD 52 162 - -
Bisa10g0078 684 Pfam U-box domain 275 346 IPR003613 GO:0004842|GO:0016567
Bisa10g0078 684 Gene3D - 522 658 IPR011989 -
Bisa10g0078 684 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Bisa10g0078 684 Pfam Armadillo/beta-catenin-like repeat 406 448 IPR000225 GO:0005515
Bisa10g0078 684 FunFam RING-type E3 ubiquitin transferase 271 348 - -
Bisa10g0078 684 SUPERFAMILY RING/U-box 275 347 - -
Bisa10g0078 684 Coils Coil 208 235 - -
Bisa10g0078 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 352 IPR013083 -
Bisa10g0078 684 FunFam RING-type E3 ubiquitin transferase 361 549 - -
Bisa10g0078 684 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Bisa10g0078 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 462 IPR000225 GO:0005515
Bisa10g0078 684 PANTHER U BOX DOMAIN-CONTAINING 52 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0078 Bisa-ChrBisa10 1212231 1214285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0078 9 682 U-box Gene Family AT5G01830 58.850 0.0 771