LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa10g0050	ATGGCTATGGAGAAAATAGGGTGTGAAGTGATGAAGGCAATGGAATCAGAGCTAGAGAGAGGGCGTGAGTTTGCGAAGCAGCTTCGACAAGTGATGTTGTTTGAGAGCAACAACACCAACACAATCGATCGTGTGGACGAGGATGTTTCTTGTGCCGAAGATCTTGTGGCCAACGTGGTCGCTTCCTTCACCAACTCTCTCTCTCTCTTCAACACTCATCCTCATCCTCAACCATCTCTTCATCTCTCTCATCCTTCCAAGTCCCAGGAATCTCAGAAAAGTTCCAAGACTACTAAACATCGAAGAGGCTGTTACAAAAGAAGGAACTACTTCAGGTGCACACACAAGTTTGATCAGGGATGCCAAGCAATCAAACAAGTTCAGAAAATCCAAGAGCATCCTCCTCTCTACAAAACCACCTATTATGGCCTTCACGCTTGTTCAAACTTGCTTGACCCACAACTCATATGGGACTCTCATCATAATGATCTTCATCTTTCAAACCCTAATTCCTTCATACTTAGCTTCCATAATCATAATGATAATCATATCTCACCCCATTCAAACCACCCTCCCTTTCTCTCTTCATCATCACCACCACCATCATCTTTCCTTAATATTTCAATAAAAAAGGAGGACCAGAACAACAACAACAACAATAATAATAATGATAATCCGTCGTTTTTGTACAACGATGATAACGTCCTGCTCTCCTCTGATGAACTCACTTTTGGATATTCAGATGACAGAGATGTGATTTCTTCAGGTGTATTTTATGATGGTGATCATGGCCTTGATGCTCTCGTCTTTGATCCCTTTGGATTTTGA	828	0.4191	MAMEKIGCEVMKAMESELERGREFAKQLRQVMLFESNNTNTIDRVDEDVSCAEDLVANVVASFTNSLSLFNTHPHPQPSLHLSHPSKSQESQKSSKTTKHRRGCYKRRNYFRCTHKFDQGCQAIKQVQKIQEHPPLYKTTYYGLHACSNLLDPQLIWDSHHNDLHLSNPNSFILSFHNHNDNHISPHSNHPPFLSSSSPPPSSFLNISIKKEDQNNNNNNNNNDNPSFLYNDDNVLLSSDELTFGYSDDRDVISSGVFYDGDHGLDALVFDPFGF	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa10g0050	275	Gene3D	WRKY domain	88	149	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa10g0050	275	MobiDBLite	consensus disorder prediction	74	92	-	-
	Bisa10g0050	275	MobiDBLite	consensus disorder prediction	184	205	-	-
	Bisa10g0050	275	MobiDBLite	consensus disorder prediction	74	102	-	-
	Bisa10g0050	275	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	107	189	IPR044810	GO:0003700
	Bisa10g0050	275	SMART	WRKY_cls	92	149	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa10g0050	275	ProSiteProfiles	WRKY domain profile.	102	145	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa10g0050	275	Pfam	WRKY DNA -binding domain	99	147	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa10g0050	275	SUPERFAMILY	WRKY DNA-binding domain	99	148	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa10g0050	Bisa-ChrBisa10	743478	745186	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa10g0050	11	249	WRKY Transcription Factor Family	AT3G56400	25.694	1.32e-17	79.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Bisa10g0050		WRKY	2.2e-09	CL0274