Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0027 ATGATTAGGGTTAGGGGAATCACGCGCATGGAAGCGTCGTCCCCAGACATCTTTACTCCTCCCCCGCCACCAGCTTCCACTTCAAATCGATACTCTATCCCATCTGCTTCTTATATTCTCCAGCCTCCCTTATCCCTTTTGCTGGAGTATTTTGGGATTCTGCGAAGCGGCTCCAATCATCTACAAACCGACTCTTTCATTGACTACCGACTCTCTTCTGGATTTCGTGCTCCTCTCCGTAGTCGCGTCCAGGAGAATTCCTCCATTCCTAATGATGGCGAGGTCTCCATCAGCATTCTCGGCTCTGGGGAACGACACCCTGATGGGGAAGGCCAAGTGAGGGAAGTGCTTTCCCAAAATGAAGTATCTTTGTCTTCGGAATCCATGGTCGGGATGCCCTCCTCAACACTTGCTCCACCTTCGGACAATCAGGAACGTTCAAGGAATGGGCGTGTTGAAGGAGAGGGCGATTCCCAATCTGTAAATGCAACTTCCGGTGCAGAGGCTGGGGATGGAGTTGGTGCTAATGTTAGGGATCCTTCGTACCAGAGATACGATATTCAGCAGGCCGCCCGCTGGATTGAGCAGGTCTTGCCCTTCTCTTTACTGTTGCTGGTTGTCTTCATTCGCCAGCATTTGCAAGGTGTTTTTGTTACAATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTACGGAAGCAGACAGCTCTAAAGGGAGAGAGGAAAGTCCCTGTACTGATCGTCATTGCTGTTGCATTTGCACTGCACGTGATTGGGTTTTACTGGTTGTGTAAGGATAACAATATGTTATATCCTTTGGCCCTGCTGCCTCCCAAAGCTATACCTCCTTTCTGGCATGCTATTTTTATCATCATGGTGAATGATGCTCTGGTCCGTCAGGCAGGAATGGTATGCAAGTGTATTTTGTTGATGTATTACAAGAATGGCAGAGCTCGAAACTATCGTAAGCAGGGGCAAATGCTGACTTTAGTTGAGTACTTACTTCTTCTTTACCGTGCCTTGTTGCCAACACCAGTATGGTATCGGTTCTTCTTGAACAAAGAATATGGAAGCCTCTTTTCTTCACTGATGACAGGATTATATCTAACATTCAAGCTCACATCTGTTATTGAAAAGGTGCAATCCTTCTTTGCTGCAATGAAGGCATTGTCACGTAAAGAAGTGCAATATGGGGCTCATGCAACATCAGAGCAGGTCAGTGCAGTTGGTGATCTTTGTGCTATTTGCCAGGAAAAGATGCATGCCCCAATCTTACTTCGTTGTAAACACATCTTCTGTGAAGACTGTGCATCAGAATGGTTTGAGAGGGAACGGACCTGCCCGTTATGCAGGGCTTTGGTAAAACCAGCAGATCTTAGATCATTTGGAGATGGCTCTACTAGTCTCTTCTTCCAGTTATTCTAA 1431 0.4654 MIRVRGITRMEASSPDIFTPPPPPASTSNRYSIPSASYILQPPLSLLLEYFGILRSGSNHLQTDSFIDYRLSSGFRAPLRSRVQENSSIPNDGEVSISILGSGERHPDGEGQVREVLSQNEVSLSSESMVGMPSSTLAPPSDNQERSRNGRVEGEGDSQSVNATSGAEAGDGVGANVRDPSYQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGVFVTIWIAAVLFKSNDILRKQTALKGERKVPVLIVIAVAFALHVIGFYWLCKDNNMLYPLALLPPKAIPPFWHAIFIIMVNDALVRQAGMVCKCILLMYYKNGRARNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVIEKVQSFFAAMKALSRKEVQYGAHATSEQVSAVGDLCAICQEKMHAPILLRCKHIFCEDCASEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0027 476 MobiDBLite consensus disorder prediction 128 175 - -
Bisa10g0027 476 CDD RING-HC_RNFT1-like 413 453 - -
Bisa10g0027 476 MobiDBLite consensus disorder prediction 82 110 - -
Bisa10g0027 476 SUPERFAMILY RING/U-box 409 458 - -
Bisa10g0027 476 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 30 476 IPR044235 GO:0061630|GO:1904294
Bisa10g0027 476 MobiDBLite consensus disorder prediction 128 145 - -
Bisa10g0027 476 ProSitePatterns Zinc finger RING-type signature. 430 439 IPR017907 -
Bisa10g0027 476 Pfam Zinc finger, C3HC4 type (RING finger) 413 456 - -
Bisa10g0027 476 ProSiteProfiles Zinc finger RING-type profile. 415 453 IPR001841 -
Bisa10g0027 476 SMART ring_2 415 452 IPR001841 -
Bisa10g0027 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 463 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0027 Bisa-ChrBisa10 371740 376101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0027 30 476 C3H Transcription Factor Family AT5G01960 63.535 0.0 565