Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000787g0009 ATGCACCACCTGTATCCGCGTTCCCGAAGGCACCCCTTTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCTGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGCTACTGATCATCGCCTTGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGTAAGCGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGCTACCATGAGACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATGATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGAACAGGTCCGAGTCAAATAGCAATGATTCGAAGCACTTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAAGGAGGGAAACGGATACTCAATTTCAAGTGAGTAAACAGAATTCCATACTCGATCTCCTAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA 1020 0.4539 MHHLYPRSRRHPFLSRGFAACQALVRFFALHRIKPHAPPLVRAPVNSFEFHSCERLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLATDHRLAVSSCCSPPKGSKRDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSYHETKDLLSKEIRFGTMICPRSNIEIISENRSESNSNDSKHFFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFQVSKQNSILDLLDTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000787g0009 339 CDD Ribosomal_S12 135 206 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa1000787g0009 339 Pfam Ribosomal protein S12/S23 126 215 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000787g0009 339 NCBIfam 30S ribosomal protein S12 125 217 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa1000787g0009 339 PRINTS Ribosomal protein S12 signature 123 138 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000787g0009 339 PRINTS Ribosomal protein S12 signature 154 173 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000787g0009 339 PRINTS Ribosomal protein S12 signature 206 218 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000787g0009 339 PRINTS Ribosomal protein S12 signature 138 153 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000787g0009 339 PRINTS Ribosomal protein S12 signature 190 206 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000787g0009 339 PRINTS Ribosomal protein S12 signature 173 190 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000787g0009 339 SUPERFAMILY Nucleic acid-binding proteins 126 216 IPR012340 -
Bisa1000787g0009 339 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 134 218 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000787g0009 339 ProSitePatterns Ribosomal protein S12 signature. 139 146 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000787g0009 339 Gene3D - 102 224 IPR012340 -
Bisa1000787g0009 339 FunFam Ribosomal protein S12, mitochondrial 106 219 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000787g0009 117 195 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 39.080 3.93e-08 50.1