Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa1000787g0005 | ATGATTCAACCTCAAACCCATTTGAATGTAGCCGATAACAGCGGAGCCCGCGAATTGATGTGTATTCAAATCATAGGAACTAGTAATCGACGATATGCTTATATTGGTGACGTTATTGTTGCTGTAATCAAGGAAGCAGTACCAAATACACCTTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAACGGTATGATAATACAATATGATGATAATGCTGCGGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGGACACTATTGCTAACATAATAACCTCTATACGAAATGCTGACATGAATAGAAAAGGGACGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTACAATACTTTTCCGAGAAGGTTTTATTGAAAACGTGAGAAAACATAGGGAAAGCAAGAAAGATTTTTTAATTTTAACTCTACGGCATAGAAGAAATAGGAAAGGATCATATAAAACTATTTTGAATTTAAAACGAATCAGTAGACCTGGTCTACGAATCTATTCTAATTATCAGCGAATTCCTAGAATTTTAGGAGGGATGGGGATTGTAATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAGGCTCGATTAGAAAGAATCGGCGGAGAAATTTTATGTTATATATGGTAA | 756 | 0.3598 | MIQPQTHLNVADNSGARELMCIQIIGTSNRRYAYIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRNNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEDTIANIITSIRNADMNRKGTVRIPSTNITENIVTILFREGFIENVRKHRESKKDFLILTLRHRRNRKGSYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW | 251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa1000787g0005 | 251 | Hamap | 30S ribosomal protein S8 [rpsH]. | 118 | 251 | IPR000630 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | FunFam | 50S ribosomal protein L14, chloroplastic | 1 | 122 | - | - | |
| Bisa1000787g0005 | 251 | Pfam | Ribosomal protein S8 | 121 | 251 | IPR000630 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | Gene3D | Ribosomal protein L14 | 1 | 120 | IPR036853 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | Pfam | Ribosomal protein L14p/L23e | 1 | 120 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | ProSitePatterns | Ribosomal protein L14 signature. | 60 | 86 | IPR019972 | - | |
| Bisa1000787g0005 | 251 | ProSitePatterns | Ribosomal protein S8 signature. | 221 | 238 | IPR000630 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | Gene3D | - | 121 | 193 | - | - | |
| Bisa1000787g0005 | 251 | FunFam | 30S ribosomal protein S8 | 194 | 251 | - | - | |
| Bisa1000787g0005 | 251 | Hamap | 50S ribosomal protein L14 [rplN]. | 1 | 127 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | SUPERFAMILY | Ribosomal protein L14 | 1 | 120 | IPR036853 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | PANTHER | 50S/60S RIBOSOMAL PROTEIN L14/L23 | 1 | 120 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | Gene3D | - | 194 | 251 | - | - | |
| Bisa1000787g0005 | 251 | SUPERFAMILY | Ribosomal protein S8 | 121 | 251 | IPR035987 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | SMART | Ribosomal_L14_2 | 1 | 122 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Bisa1000787g0005 | 251 | NCBIfam | 50S ribosomal protein L14 | 1 | 120 | IPR005745 | GO:0003735|GO:0006412|GO:0015934 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa1000787g0005 | 8 | 118 | Cytoplasmic Ribosomal Protein Gene Family | AT1G04480 | 35.652 | 2.87e-16 | 71.6 |