Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000741g0003 ATGCACCACCTGTATCCGCGTTCCCGAAGGCACCCCTTTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCTGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGTAAGCGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG 543 0.488 MHHLYPRSRRHPFLSRGFAACQALVRFFALHRIKPHAPPLVRAPVNSFEFHSCELSVSAQQSAFAVGVLSDLYAFHRSTGNSLCPYRTPACKRDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000741g0003 180 CDD Ribosomal_S12 101 172 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa1000741g0003 180 NCBIfam 30S ribosomal protein S12 91 177 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa1000741g0003 180 PRINTS Ribosomal protein S12 signature 89 104 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000741g0003 180 PRINTS Ribosomal protein S12 signature 104 119 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000741g0003 180 PRINTS Ribosomal protein S12 signature 139 156 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000741g0003 180 PRINTS Ribosomal protein S12 signature 120 139 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000741g0003 180 PRINTS Ribosomal protein S12 signature 172 180 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000741g0003 180 PRINTS Ribosomal protein S12 signature 156 172 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000741g0003 180 ProSitePatterns Ribosomal protein S12 signature. 105 112 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000741g0003 180 Pfam Ribosomal protein S12/S23 88 175 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000741g0003 180 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 100 177 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000741g0003 180 Gene3D - 70 179 IPR012340 -
Bisa1000741g0003 180 SUPERFAMILY Nucleic acid-binding proteins 85 177 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000741g0003 102 161 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 44.118 1.36e-08 49.7