Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000733g0065 ATGGCGCCAGACCCGACACCGTTTCCGATCGACCATCTGTTGCGGGGAGACCCTGACGCCCCAGCGCTGATCGAGCGCGCGCGGACGTGGCGCTTCGCTGATGTCGAGGCGGCGGTGGCGAGTGTCGCGGGCTGGCTTGCGGCGTCTGGATTGGCGCCGGGGGCGCGGGTCGCAACATGGCTGCCCAAGACGGCGCTGGCGTGCGTCATGCCGCTCGCCGCGGCGCGGGCGGGGGTGGTGCATGTGCCGGTCAACCCGGCGCTGCGCCGGGCGCAGGTCGCGCATATTCTGGCCGACAGTGGCGCGGCGTTGCTCGTGACGCAGGCGGCACGCGCGGCGACGCTGGAGGCTGGTGACCGACCCGACGACTGCCGGGTGGTCGAGGCGGACGCGGTGCCGATGGCCGATGCCGGGCCGGGGCGGTCGGACCGCGATCCGGCATCGCTGGCGGCGATCCTCTACACCTCCGGGTCGACGGGGCGGCCGAAGGGCGTGATGCTGAGCCATGCTAACCTGTGGCTGGGGGCGGTGTCGGTCGCGCACTATCTGCGCCTGTCGCCCGCGGATCGCGTGTTGGGGGTGTTGCCGCTGTCGTTCGACTATGGGCAGAACCAGCTGCTTTCGAGCTGGTATGCCGGCGCGGCGGTGGCACCGCTCGACTATCTGACCGCGCGCGACGTGGTGAAGGCGGTCGAGCGCACGCAGGCGACGACGCTCGCCGGCGTGCCGCCGTTGTGGGTGCAACTGCTGGAGGCGGACTGGCCGGCGGAGACGGCGGCGCGGCTGCGGCGGCTGACCAACTCGGGCGGCGCGCTGACCGAGCGGCTGGTGCGCGGCCTGCGGTCGCGCTTCCCGCAAGCGGATCTGGTGGCGATGTACGGCCTGACCGAGGCGTTCCGGTCGACTTGGCTCGACCCGGCGCTGATCGATGCGAATCCCGATGCGATGGGTCGGGCGATCCCCTTTGCCGAGGTGGCGGTGGTGAAGGCGGACGGGACGCGCGCGGTCGGCGAGCCGGGCGAACTCGTTCACGCCGGGCCGCTGGTTGCGCAGGGCTATTGGCGCGATGCGGAGCGGACCGCGCAGCGCTTTCGCCCAGCGCCCCCGTGGATGGCGAGCGGCGGCATGGCGGTCTGGTCGGGCGATACGGTGCTGGAGGGCGCGGACGGCCTGCTGCGCTTCGTCGGGCGCGATGACGAGATGATCAAGAGCGCGGGCAACCGGATCAGTCCGCTGGAGGTGGAGGAAGCGGTGCTCGCCGGTGGCGAGGCGCGCGAGGCGGTGGCGGTCGGCGTGCCGGATCCGCGCTCCGGGCAGGCGATCGTGGTGGTGCTGGCGGGCGATCCGGCGGGCGAAGGCGCCTTGCGCGCGCGCTGGACCGGGCGGCGATCCGGGCGGAGACGAGAGCATGAAGCCGATGGGGCGCTGCCGCCCGAATTCGCCGGGCAGCGCGGCAGGTTGACGATCGCAGGGCGGCCTGCGGATGACTGGGCGGAGGCGACGCCCGTCTTCGTCTATGACGTCGGCATCGTCGCGGCGCGGGTGGCGCGGTTCCGGGCGGCCTTCCCCGACGTGGATCTGCATTATGCGATCAAAGCCAACCCTTTGCCCGCGCTGCTCGACCGGGTCGCGCCGCTGGTTGACGGTCTGGATGTCGCGTCGGGTGGCGAGCTGGACAAGGCCTTGGCGGTGAAGCCCGCGTCGGCGATCAGCTTCGCCGGGCCGGGCAAGCGCGATGTCGAGTTGCGCGCGGCGATCAGGGCGGGCGCGACGCTCAACGTCGAATCTGAAGGCGAGGCGACGCGGGCGTTGCGGCTGGGTGAGGAGCTTGGCATCGCTCCGCGGCTGGCGGTGCGGGTCAATCCCGACGTCGAATTGCGCGGTTCGGGCATGCGGATGGGCGGGCGACCGTCGCCCTTCGGCGTCGACGCGGTGCGCGCGGCGGCGCTCGTCCGCGCGATCGTCGCGAGCGGGGCGGACTGGCGGGGCTTTCACATTTATGCCGGCAGTCAGGCGCTGGATGCCGGCGCGATCGCCGAGACGCAGGCCGCGACGCTGGCGCTTGCTGCGCGACTCGCCGACGAGGCGGGGGTGGTGCCGCCGCTGGTCAATCTGGGCGGCGGGTTCGGCGTGCCCTATTTTGCCGGCGACGTGCCGCTGGATGTCGAGGCGGTGGGCGTGGCGCTGAGCGAGGCACTGGCGACGCGGCCCGCCGTTCTGAGCCAGGCCCGTTTCGCGATCGAGCTGGGGCGCTGGCTGGTGGCGGAGGCGGGCGTCTATCTGACGCGGATCGTCGATCGCAAGGAGAGCCAGGGCGAGACGTTCCTCGTCACCGATGGCGGCCTCAATCACCAGCTCGCCGCGTCGGGCAATTTTGGCACGGTGGTACGACGCAACTATCCGCTGGCGCTGGCCCGCGACGTTGGCGGCGTGGGCGACGACACGGTGTCGGTGGTGGGGCCGCTGTGTACGCCGCTTGACCGGCTGGGCGACCGGATCGCGCTGCTGTATGCCGAACCGGGCGACCTGATCGCGATCTTCATGGCGGGGGCCTATGGTGCCAGCGCCAGTCCGTCCGGCTTTCTGGGTCATCCGCCCGCGGTGGAGATCGTTGCGGGTTAG 2622 0.7216 MAPDPTPFPIDHLLRGDPDAPALIERARTWRFADVEAAVASVAGWLAASGLAPGARVATWLPKTALACVMPLAAARAGVVHVPVNPALRRAQVAHILADSGAALLVTQAARAATLEAGDRPDDCRVVEADAVPMADAGPGRSDRDPASLAAILYTSGSTGRPKGVMLSHANLWLGAVSVAHYLRLSPADRVLGVLPLSFDYGQNQLLSSWYAGAAVAPLDYLTARDVVKAVERTQATTLAGVPPLWVQLLEADWPAETAARLRRLTNSGGALTERLVRGLRSRFPQADLVAMYGLTEAFRSTWLDPALIDANPDAMGRAIPFAEVAVVKADGTRAVGEPGELVHAGPLVAQGYWRDAERTAQRFRPAPPWMASGGMAVWSGDTVLEGADGLLRFVGRDDEMIKSAGNRISPLEVEEAVLAGGEAREAVAVGVPDPRSGQAIVVVLAGDPAGEGALRARWTGRRSGRRREHEADGALPPEFAGQRGRLTIAGRPADDWAEATPVFVYDVGIVAARVARFRAAFPDVDLHYAIKANPLPALLDRVAPLVDGLDVASGGELDKALAVKPASAISFAGPGKRDVELRAAIRAGATLNVESEGEATRALRLGEELGIAPRLAVRVNPDVELRGSGMRMGGRPSPFGVDAVRAAALVRAIVASGADWRGFHIYAGSQALDAGAIAETQAATLALAARLADEAGVVPPLVNLGGGFGVPYFAGDVPLDVEAVGVALSEALATRPAVLSQARFAIELGRWLVAEAGVYLTRIVDRKESQGETFLVTDGGLNHQLAASGNFGTVVRRNYPLALARDVGGVGDDTVSVVGPLCTPLDRLGDRIALLYAEPGDLIAIFMAGAYGASASPSGFLGHPPAVEIVAG 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000733g0065 873 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 501 871 IPR009006 GO:0003824
Bisa1000733g0065 873 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 549 561 IPR000183 GO:0003824
Bisa1000733g0065 873 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 745 764 IPR000183 GO:0003824
Bisa1000733g0065 873 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 529 547 IPR000183 GO:0003824
Bisa1000733g0065 873 NCBIfam pyridoxal-dependent decarboxylase, exosortase A system-associated 496 871 IPR017530 -
Bisa1000733g0065 873 PRINTS Ornithine decarboxylase signature 570 594 IPR002433 GO:0006596
Bisa1000733g0065 873 PRINTS Ornithine decarboxylase signature 527 554 IPR002433 GO:0006596
Bisa1000733g0065 873 PRINTS Ornithine decarboxylase signature 501 525 IPR002433 GO:0006596
Bisa1000733g0065 873 PRINTS Ornithine decarboxylase signature 817 827 IPR002433 GO:0006596
Bisa1000733g0065 873 SUPERFAMILY Alanine racemase C-terminal domain-like 729 870 IPR009006 GO:0003824
Bisa1000733g0065 873 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 756 850 IPR022643 GO:0003824
Bisa1000733g0065 873 ProSitePatterns Putative AMP-binding domain signature. 152 163 IPR020845 -
Bisa1000733g0065 873 Gene3D - 398 465 IPR045851 -
Bisa1000733g0065 873 Pfam AMP-binding enzyme 16 404 IPR000873 -
Bisa1000733g0065 873 SUPERFAMILY Acetyl-CoA synthetase-like 11 452 - -
Bisa1000733g0065 873 Gene3D - 10 397 IPR042099 -
Bisa1000733g0065 873 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 693 710 IPR022657 -
Bisa1000733g0065 873 Gene3D Alanine racemase 508 757 IPR029066 -
Bisa1000733g0065 873 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 511 755 IPR022644 GO:0003824
Bisa1000733g0065 873 SUPERFAMILY PLP-binding barrel 501 757 IPR029066 -
Bisa1000733g0065 873 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 450 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000733g0065 28 439 Monolignol Biosynthesis Gene Families AT1G20480 26.742 2.74e-28 119