Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000733g0025 ATGCGGATTATCTCTACGGCGCCGCGCGCGGGCAGGATTTCCGCCCGGTGCGCGCACATCGCGCCGCCAAGTCGATCGGCGCGGAGCGGACGTTCGAAACCATCTGACCGATCCCGCCGACCTCCACGCCGCGCTCGCCCGCGTCGCCGATGCGGCATGGGAGCGCGTCGAACGCTCCGGGGCGCAGGGCAAGACGGTGACGATGAAATTGCGCCACGCCGACTTCCAGACGATCACCCGCGCCCGCTCGCTCACCGTGCCGGTGGCGAGCAAGGCAGCGTTCCTCGGCATCGGCATCGACCTGCTGACCGCGCAGCTGCCCGTGCCGGGCGGCGTCCGCCTGCTCGGCCTGACGCTGTCCGGCATCCTGCGGCCGAGTGCCGGGCCGGCGGACGACGAGGTGCAGCCGAGTTTGCCGTTGTAGGGTTTGCTGCGGCCCTGAACCGGGGGCTCACTTTTGGTGGTCGGGAAAGAAGCGGGACCCCGGATCAAGTCCGGGGTGACGGGCAGAGGGTGCGCGAGCCGGGCGGCATGCGGTGGTGCGCGTATGTGGGAAGCCATAACCGAGGCCGGACCCTTGAGGGCCAAGCTTGCCGCTGGCTTCGGCGGCATCTGCTTGAGCCGAGCCGCGCGTCCTGGCTGATCTGGACGGTCGCGACGGGGGTCGAGGCCGCCACCTATGTCGCGGTCAATCCGGGTGAGCCGCAGGGCATCGTCTTCATCGTCTCCGCGCTCGCCTGTATCGTCGTGACGCTTGCCATGTGGCGCCGCTCGCGCTGGACGCGGCCGTCCTCGACCGAGACGATCTGCATGGCGGCCAGCCTCGCCGCGATCATCCTGTGGCTGCCGCTGCAGGAAACATTCTGGGCGCATATGCTTGTCGTCGCGGCGGTGCCGCTGGGCTTCTGGCCGACCTGGGCGAGCGTGTGGGAGGATCGCGCGCGCGAACGCTCGCCGGCCTGGGGGCTGTGGGACGCTGGGCGATATGGCGACGCTGCTGGTGACGATGCGCAGCCCGGGGTCGGGCGTGGGCGAATATGGCTATGTCGTCGTCGAGCTGCTGTGCCACGCCAGCGTCTGGTTCATGGTCGGCCTGGCGACGCTCAACCCGATCCGTTCGTTCGGGCGGCGCGAGGGCAAGCTGCGCGTGCTCGACGCCTATCTGCCCGCCAACCCGTTCGCGGTCGGCGAGACGCATATCGGCAAGGCGGTGTTCGCCGCACAGGCTTCGCGCAAGCCGAGACGATCGTGCGCTTCTCCGGCCCGATCGTCCCCGCCGCGCGTCTGCCGCAAGGGTTGAGCGGCGCGTCGGACCGGTATCTGCAGATCGGGCGCGACCGCTACATGGGGCCGTCGGGGCGGATCGACGATCTGATCAACCACAGCTGTTCGCCCAATGCGGGCCTGCGCTTCACCGACGACGGCGTCTTCCTCGTTGCGCTCCGCCCGATCGCACCGGGCGAGGAGATCGCCTGGGACTATTCCACCACGCTTGCCGATCCCGACTGGTCGATGCAATGCGCGTGCGGCAGCCCCGAATGTCGGGGCGTCATCCGCGCCTTTGCGTTGCTGCCGGCGGAGGTGCAGGACCGCTATCGCGCGATGGGATCGTGGCGCCGTATCTGGACGAGCGTGACCTGGGACGCCGCGTCGCGTAGATTTAGACGCGTGCAATGCCCCGCGCGCGCCCAACCCCGTCACCCGGACGTGATCCGGGGTCTGGCTTTATCAGCGGCAGAAGAAAGAAGCGGGATCCCGGCTCGAGGCCGGGATGACGAGGGAAGGATTGGCAACAGAGAACGACCACCCCTGTCGTGGCCGTCGGGCGGTCCATGTTGCCCCACCCCCTTGCCCCCGCGCGCCTTTGCGCGTTACATCAACCTGCAGGTTCCTGCAGGCGACGCCAAGCCCGCCCCGCCGATCGGCCCGGCGCTGGGTCAGCGCGGCGTGAACATCATGGAATTCTGCAAGGCGTTCAACGCGCAGACGACCGACATGGACAAGGGCACGCCGCTGCCCACCAAGATCACCGTCTATGCCGACCGTTCGTTCAGCTTCGAAATCAAGACGCCGCCGGCGTCGTTCCTGATCAAGAAGGCCGCCGGCCTGAAGTCGGGTTCGAAGGAGCCGGGCAAGGTCGTCGCGGGCAAGATCGCGCGCAGCAAGCTCGCCGAGATCGCCCAGACCAAGATGAAGGATCTGAACGCCAACGACATCGAGGCTGCGACCAAGATCATCGAAGGCTCCGCCCGCGCGATGGGGCCTCGAAGCGATCGCGCTCGCGAAGCAGAACGCCACCGCCAAGTTCGACGAGACGATCGAAGTCGCGCTGAACCTGGGCGTCGATCCGCGCCACGCCGACCAGATGGTCCGCGGCGTCGTGACCCTGCCCGCCGGCACCGGCAAGACCGTCCGCGTCGGCGTCTCGCCCGCGGTCCGAAGGCTGACGAAGCGCGCGCCGCCGGCGCCGACGTCGTCGGTGCGGAAGACCTGATGGAAACGATCCAGGGCGGCACGATCGACTTCGATCGCTGCATCGCGACCCCGGACATGATGGGCGTCGTCGGCCGCCTCGGTAAGGTGCTGGGCCCAAGGGCCTGA 2601 0.6863 MRIISTAPRAGRISARCAHIAPPSRSARSGRSKPSDRSRRPPRRARPRRRCGMGARRTLRGAGQDGDDEIAPRRLPDDHPRPLAHRAGGEQGSVPRHRHRPADRAAARAGRRPPARPDAVRHPAAECRAGGRRGAAEFAVVGFAAALNRGLTFGGRERSGTPDQVRGDGQRVREPGGMRWCAYVGSHNRGRTLEGQACRWLRRHLLEPSRASWLIWTVATGVEAATYVAVNPGEPQGIVFIVSALACIVVTLAMWRRSRWTRPSSTETICMAASLAAIILWLPLQETFWAHMLVVAAVPLGFWPTWASVWEDRARERSPAWGLWDAGRYGDAAGDDAQPGVGRGRIWLCRRRAAVPRQRLVHGRPGDAQPDPFVRAARGQAARARRLSARQPVRGRRDAYRQGGVRRTGFAQAETIVRFSGPIVPAARLPQGLSGASDRYLQIGRDRYMGPSGRIDDLINHSCSPNAGLRFTDDGVFLVALRPIAPGEEIAWDYSTTLADPDWSMQCACGSPECRGVIRAFALLPAEVQDRYRAMGSWRRIWTSVTWDAASRRFRRVQCPARAQPRHPDVIRGLALSAAEERSGIPARGRDDEGRIGNRERPPLSWPSGGPCCPTPLPPRAFARYINLQVPAGDAKPAPPIGPALGQRGVNIMEFCKAFNAQTTDMDKGTPLPTKITVYADRSFSFEIKTPPASFLIKKAAGLKSGSKEPGKVVAGKIARSKLAEIAQTKMKDLNANDIEAATKIIEGSARAMGPRSDRAREAERHRQVRRDDRSRAEPGRRSAPRRPDGPRRRDPARRHRQDRPRRRLARGPKADEARAAGADVVGAEDLMETIQGGTIDFDRCIATPDMMGVVGRLGKVLGPRA 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000733g0025 866 Pfam SET domain 453 494 IPR001214 GO:0005515
Bisa1000733g0025 866 MobiDBLite consensus disorder prediction 18 123 - -
Bisa1000733g0025 866 SUPERFAMILY Ribosomal protein L11, C-terminal domain 685 754 IPR036769 -
Bisa1000733g0025 866 MobiDBLite consensus disorder prediction 584 599 - -
Bisa1000733g0025 866 SUPERFAMILY Ribosomal protein L1 809 865 IPR023674 -
Bisa1000733g0025 866 Pfam Ribosomal protein L11, N-terminal domain 626 684 IPR020784 -
Bisa1000733g0025 866 Gene3D - 688 755 IPR036769 -
Bisa1000733g0025 866 Hamap 50S ribosomal protein L11 [rplK]. 622 759 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bisa1000733g0025 866 MobiDBLite consensus disorder prediction 747 822 - -
Bisa1000733g0025 866 ProSiteProfiles SET domain profile. 391 495 IPR001214 GO:0005515
Bisa1000733g0025 866 PANTHER 60S RIBOSOMAL PROTEIN L12 617 754 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bisa1000733g0025 866 MobiDBLite consensus disorder prediction 754 796 - -
Bisa1000733g0025 866 Pfam Ribosomal protein L11, RNA binding domain 689 754 IPR020783 GO:0003735|GO:0005840|GO:0006412
Bisa1000733g0025 866 MobiDBLite consensus disorder prediction 583 611 - -
Bisa1000733g0025 866 MobiDBLite consensus disorder prediction 37 55 - -
Bisa1000733g0025 866 Gene3D - 620 687 IPR036796 -
Bisa1000733g0025 866 Gene3D - 808 865 IPR016095 -
Bisa1000733g0025 866 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 622 690 IPR036796 -
Bisa1000733g0025 866 MobiDBLite consensus disorder prediction 61 123 - -
Bisa1000733g0025 866 SUPERFAMILY SET domain 457 516 IPR046341 -
Bisa1000733g0025 866 CDD Ribosomal_L11 626 754 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bisa1000733g0025 866 Gene3D SET domain 430 521 IPR046341 -
Bisa1000733g0025 866 SMART rl11c 626 758 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bisa1000733g0025 866 ProSiteProfiles Post-SET domain profile. 503 519 IPR003616 -
Bisa1000733g0025 866 FunFam 50S ribosomal protein L11 619 687 - -
Bisa1000733g0025 866 NCBIfam 50S ribosomal protein L11 623 754 IPR006519 GO:0003735|GO:0005840|GO:0006412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bisa1000733g0025 Ribosomal_L11 6.3e-21 No_clan