Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000549g0004 ATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGCCAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGCTTCGTCCAAGCGGGATCCGAGGTATCCGCCTTATTGGGTCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCGATTCAAGCAGTTTATGTACCTGCAGACGATTTGACCGATCCTGCTCCTGCCACCACATTTGCCCATTTAGATGCTACTACCGTACTATCAAGAGGATTGGCTGCTAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGGATCGTTGGTGAAGAACACTATGAAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGTTAGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAGCCTTTTTTCGTAGCAGAAGTATTTACCGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCCGAACAGGCCTTTTATTTGCAAATTGAAGAAATGACCTTAAATCTTTGTGTACTGACCCCAAATCGAATTGTTTGGGATTCAGAAGTGAAGGAAATTATTTTATCTACTAATAGTGGACAAATTGGAGTATTACCGAATCACGCGCCTATTGCCACAGCTGTAGATATCGGTATTTTGAGAATACGCCTTAACGACCAATGGTTAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAGACCACTGTTTTAGTAAATGATGCGGAGAAGGGTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCTGAAGGCAAGAGACAAACAATTGAGGCAAATCTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATATGATTTCGTAA 1128 0.4211 MNEPPGARMRVGLTALTMAEYFRDANEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLQIEEMTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWLTMALMGGFARIGNNETTVLVNDAEKGSDIDPQEAQQTLEIAEANLSKAEGKRQTIEANLALRRARTRVEAINMIS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000549g0004 375 FunFam ATP synthase epsilon chain, chloroplastic 243 329 - -
Bisa1000549g0004 375 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 1 134 IPR000194 GO:0005524
Bisa1000549g0004 375 Coils Coil 338 358 - -
Bisa1000549g0004 375 Gene3D - 331 375 - -
Bisa1000549g0004 375 PANTHER ATP SYNTHASE 1 243 - -
Bisa1000549g0004 375 CDD F1-ATPase_delta 245 365 IPR001469 GO:0015986|GO:0045261|GO:0046933
Bisa1000549g0004 375 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 328 371 IPR020547 -
Bisa1000549g0004 375 Gene3D - 137 245 IPR024034 -
Bisa1000549g0004 375 NCBIfam F0F1 ATP synthase subunit beta 1 238 IPR005722 GO:0015986|GO:0045261|GO:0046933
Bisa1000549g0004 375 CDD ATP-synt_F1_beta_C 141 242 - -
Bisa1000549g0004 375 Gene3D - 246 329 IPR036771 -
Bisa1000549g0004 375 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 243 324 IPR036771 -
Bisa1000549g0004 375 Gene3D - 1 134 IPR027417 -
Bisa1000549g0004 375 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 245 323 IPR020546 GO:0015986
Bisa1000549g0004 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 139 IPR027417 -
Bisa1000549g0004 375 NCBIfam ATP synthase F1 subunit epsilon 244 372 IPR001469 GO:0015986|GO:0045261|GO:0046933
Bisa1000549g0004 375 ProSitePatterns ATP synthase alpha and beta subunits signature. 125 134 IPR020003 GO:0005524
Bisa1000549g0004 375 FunFam ATP synthase subunit beta 137 247 - -
Bisa1000549g0004 375 Hamap ATP synthase epsilon chain [atpC]. 243 370 IPR001469 GO:0015986|GO:0045261|GO:0046933
Bisa1000549g0004 375 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 137 238 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000549g0004 2 198 Primary Pumps ATPases(2) AT1G78900 30.516 2.82e-19 87.8