Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000282g0047 ATGGGCGTCAAGGCAAGGTACGCCTGCACCGGCTTAAGGCCCGCCTTTACTCCGGCTGTGTATCGCTTGCCCCGAACCGGGACGGAAAACCTTATGACGCGCAACGGGCAGCGGCTGCTTCTGCTGATCGACGACGAACCTGCGCAGCGGCGATTGGTGTCGGCGCTGGCCGCGCGTGCCGGCTGGCGATCGATCTTCGCCGCCGATGGCGAGATGGCGCTGGCACAGCTCGGCACGCAGGATGGGATGCAGCTGGACGCGATCCTGCTCGATCATTGGGCGCCCGATGCCGATGCCGGCCCGCTGATCGCGGAGCTGCGCGAACGACGCCCCGCGCTCCCCATCCTGATGCTCACCGCCAACGGATCGGTCGCGCATGCCGTCGCGGCGATGCGTGCGGGCGCGACCGATTTCCTGGTGAAGCCGCTGGCGCCCGAACGCCTGCTCGCCGCGCTGGAGGCAGCGGTGGCGGGCACGGCGGCGGGGGAATTGCGCCCGCTGACCGAAAAGATCCCGGCGCTGCTGGCGTTCGACGAGATCGTCGGGTCCTCGCCCGATTTCCGCGCCGCGCTCGCCATCGCCGCCAAGGCGGCGCGCGCGCGCGTGCCGGTGCTGGTCGAAGGCGAAAGCGGCGTCGGCAAGGAGGTGGTCGCCGATGCGATTCATGCCGCCTCGCCGCGATCGAAGAAACCGATGGTCACCGTCAATTGCGGGGCGATCCCGGCGAACCTCGTCGAATCCGAATTGTTCGGGCATGAGAAGGGCGCGTTCACCGGCGCATTCGAGCGCAAGATCGGCAAGTTCGCCGATGCCGACGGCGGCACCATCCTGCTCGACGAAGTCGGCGAAATGCCGCTCGAAGCGCAGGTGAAGCTGTTGCGCGTGCTGCAATCGGGCGAAATCCAGCCGATCGGCGCGCGTCATGCGCGGCAGGTGGACGTGCGCGTGATCGCTGCGACGAACAAGACGCTGCTCGACGAGGTCGCCGCCGGGCGGTTCCGCGAGGACCTTTATTACCGGCTCAACGTGGTGCAGGTGACGATCCCGCCCTTACGCGAACGGCTGGCCGACGTGCCGGCGCTGGCGCGGCATCTGCTGGCGCGGATCGCGCAGCAACCGGGGGCTAAGGCCGCTGGGGATCACCGACGACGCGCTGGCGCTGCTGGTGCAGTACGACTGGCCGGGCAACGTCCGCCAGTTGCAGAACGCGCTCTTCCGCGCCGCGGTGCTGTGCGAGGGCGCGGCGCTGACGCGGGCGGATTTCCCGCAGATCGCCTCGCTGGGCAATCGCCGGCCGGGGAGCGCGGGCACCGCCACGCTGTCGGGCGGCGGGGTGACGCTGTTCCGGCCGGACGGCAACCTGCGCCCGCTGGAGGATATCGAAGCGGACGTGATCCGCCTTGCCATCGGCCATTATCGCGGGCGGATGACCGAAGTCGCGCGACGGCTGGGGGATCGGGCGCTCGACCTTATATCGCAAGCTCGGTGAGTTGGGCATCGATAACGCCGCGGCGTAGATCCTGCTATGCGGGACGGCATGAGCCGCTTCGCGAACCGTCACATCCTCGTCACCGGTGCCGCATCGGGCATCGGCCTCGCCACCGCGCAGCATCTCGCCGCCGAGGGCGCGCGCCGGCTGGTGCTGATCGACCGCGATGCGGCGGCGCTGGCCGCGATCGACCTGCCGTGCACGCTGGACCTGCTGCCCGGCGACGTTGCGGACGAGGCGTTCTGGGACACCGCGGCACCCTATCTTGCCGGCATCGACGGTGCGGTGGTCAATGCCGGGGTGGCCGGCGCGGGCATCATCGCCGACCTCGACTTCGCCGAATGGCGACGCATCCTGTCGGTGAATCTGGATGGCGCGTTCCTGACGCTGCGCGCGGCATTGCGGGCGATGGCGGACGGCGGCGCGATTGTCGCGACCGCATCGGCAGCGGGGATCAAGGCGGAGGCGGGCGTCGCCGCTTATGGCGCGTCGAAGGCGGCGCTGATCCATATGGTGAAGGTCGCCGCCAAGGAGGCCGCGGCGCGACGCATCCCGCGTCAACGCCATCGCCCCAGCCGGGGTCGAAACCCCGGTGTGGGATGCCATCCCGATGTTTGCGAACCGGGTCGCCGCAATCGGTCGTGACGCCGCCTTTGCGGAAATGGCGGCGATGGCCACGCCGCTGGGCGCTATGCCAAGGCGGAGGAGATTGCCGCGCAGATCGGCTTCCTCCTGTCCGACGACGCCGCGCTCGTCACAGGCAGCTGCCTGCTGAGCGACGGCGGCTATACGCTGTAGCTTACCAGAGCACGCCCTTGACCGGGGTCAGCGGCGGGGGTGCCTCGTCACCGATCGACTGGAGCAGATCGATCTCGATCGTCCGGCACATCGCGGTCAGCGGCAGATCGTGA 2400 0.6937 MGVKARYACTGLRPAFTPAVYRLPRTGTENLMTRNGQRLLLLIDDEPAQRRLVSALAARAGWRSIFAADGEMALAQLGTQDGMQLDAILLDHWAPDADAGPLIAELRERRPALPILMLTANGSVAHAVAAMRAGATDFLVKPLAPERLLAALEAAVAGTAAGELRPLTEKIPALLAFDEIVGSSPDFRAALAIAAKAARARVPVLVEGESGVGKEVVADAIHAASPRSKKPMVTVNCGAIPANLVESELFGHEKGAFTGAFERKIGKFADADGGTILLDEVGEMPLEAQVKLLRVLQSGEIQPIGARHARQVDVRVIAATNKTLLDEVAAGRFREDLYYRLNVVQVTIPPLRERLADVPALARHLLARIAQQPGAKAAGDHRRRAGAAGAVRLAGQRPPVAERALPRRGAVRGRGADAGGFPADRLAGQSPAGERGHRHAVGRRGDAVPAGRQPAPAGGYRSGRDPPCHRPLSRADDRSRATAGGSGARPYIASSVSWASITPRRRSCYAGRHEPLREPSHPRHRCRIGHRPRHRAASRRRGRAPAGADRPRCGGAGRDRPAVHAGPAARRRCGRGVLGHRGTLSCRHRRCGGQCRGGRRGHHRRPRLRRMATHPVGESGWRVPDAARGIAGDGGRRRDCRDRIGSGDQGGGGRRRLWRVEGGADPYGEGRRQGGRGATHPASTPSPQPGSKPRCGMPSRCLRTGSPQSVVTPPLRKWRRWPRRWALCQGGGDCRADRLPPVRRRRARHRQLPAERRRLYAVAYQSTPLTGVSGGGASSPIDWSRSISIVRHIAVSGRS 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000282g0047 799 MobiDBLite consensus disorder prediction 372 490 - -
Bisa1000282g0047 799 MobiDBLite consensus disorder prediction 523 541 - -
Bisa1000282g0047 799 Gene3D - 40 160 - -
Bisa1000282g0047 799 MobiDBLite consensus disorder prediction 542 557 - -
Bisa1000282g0047 799 ProSiteProfiles Response regulatory domain profile. 39 156 IPR001789 GO:0000160
Bisa1000282g0047 799 SUPERFAMILY CheY-like 40 224 IPR011006 -
Bisa1000282g0047 799 CDD REC 41 142 - -
Bisa1000282g0047 799 ProSitePatterns Sigma-54 interaction domain ATP-binding region A signature. 204 217 IPR025662 -
Bisa1000282g0047 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 373 IPR027417 -
Bisa1000282g0047 799 SMART REC_2 38 152 IPR001789 GO:0000160
Bisa1000282g0047 799 CDD AAA 203 350 - -
Bisa1000282g0047 799 Pfam Sigma-54 interaction domain 180 346 IPR002078 GO:0005524|GO:0006355|GO:0008134
Bisa1000282g0047 799 ProSitePatterns Sigma-54 interaction domain ATP-binding region B signature. 266 281 IPR025943 -
Bisa1000282g0047 799 Gene3D - 172 351 IPR027417 -
Bisa1000282g0047 799 PANTHER TRANSCRIPTIONAL REGULATORY PROTEIN 38 374 - -
Bisa1000282g0047 799 SMART AAA_5 200 343 IPR003593 GO:0016887
Bisa1000282g0047 799 MobiDBLite consensus disorder prediction 617 712 - -
Bisa1000282g0047 799 Pfam Response regulator receiver domain 41 152 IPR001789 GO:0000160
Bisa1000282g0047 799 MobiDBLite consensus disorder prediction 512 567 - -
Bisa1000282g0047 799 MobiDBLite consensus disorder prediction 631 666 - -
Bisa1000282g0047 799 ProSiteProfiles Sigma-54 interaction domain profile. 180 405 IPR002078 GO:0005524|GO:0006355|GO:0008134
Bisa1000282g0047 799 FunFam DNA-binding transcriptional regulator NtrC 172 350 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000282g0047 40 148 Response Regulator Gene Family AT4G31920 27.523 3.13e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa1000282g0047 Sigma54_activat 5.4e-67 CL0023