Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000167g0017 ATGGGGTTCAAGGTGTTCAGCGACGTGCGTTACGATGCGGCAAGCGGGACCCTGCGCTTCGTGAAGATCGATCCACAGCATGGCCGGCGCGAGATGAGCCTGCCCGTGCATCCGGCCGACCGCCCGACGCTGGCGAACCTCGACGCACACGACGATGTGATGGCGGAATTTCGCGTCGGCTCCGGCGCGGAGGCCGAATGGCACCTGCTGCTGGCACATGATCACGACCCTGCGTTCGAGCGGTGGCGGTTCGGCTGCGTCGTGCGGCTGCGCACCGCCAAGGCGTTCCAGACCGAGATGCGGCACCATGCCCGCCTGATGGAGCTGGGCGGCATGGCATCGGCGCTGAGCCACGAACTGCGGCAACCGCTGTTCACCATCGCGCTCGCCGCGGAGAACGGGCGGCTATCCCTCACCCAGTCGGACGAGGCGTCGGGGCGCGCTGCACAGAAATTCGATCGGATCATCGAACAGGTGGACCGCGCGACCGCCATCGTCGAACGCACGTCGGGCTATGCACGGCTGGAGCGCGGCGGCAGCGAGCCGATCAGCATCATCGACGCGATCCAGAATGCCGCGCGATTCATGCGTCCCGTGCTGTCCGAACGCGACATCGCGCTGCGGATCACCGCGCCGGCGTCGCTCCCCATCCTGGAACTGCCGCGCGTCGGGATCGAGCAGATCATCGTCAATGCCCTGCAGAACGCCGCCGATTCGATCGATACCGCCCGTGCCGCGGGCGACGCCGGACCTGCCCGGATCACTATCGACCTCGCCCAGCGCGACAGGATGGTCGAGGTCGTCATCGACGATACCGGCACCGGACTGGCGGACGCGGTGGCGGGGACGGCGTTCGATGCCTTTTCCACGACCAAGCCGATCGGCAAGGGCACGGGACTGGGGCTGTTCGTCTGCCGCCAGATCATGGACGAGCCCACCGCCCATGCCTATGTCGTGGACGACGACGCGGCGTTGCGCGCCGAGCTGGCGGACACGCTGGCGGCTGCCGGGCTTGAGGTGCGCACCTTTCCCGATGGCCGTGCCTTCCTGGACGAACAGGCGATGCTGCCCGAAGGCTGCGTGGTGCTCGACGTCAACATGCCCGGATTGAGCGGTCGTGAGGTGCAGGACGAGTTGCGGCGGACCGGCAGCCATCATCAGATCGTGATGTTGACCGGCGCGGCGACTGTGCCGCTGGCCGTCGAGGCGCTGCATGCGGGGGCCGCCGACTTCATCGAAAAACCGATGCGCCCCGCCACGTTGCGCCAGGCCGTGATGCGGGCGCTGGAACGGTTGCGGCAGGACCAGCGCGCACGCGGCCGGACGGCCGCCGCGCAGCGCTGCCTGGAACGCCTGTCCGATCGCGAGCGCGACGTGCTGGCGGGGCTGGTACTGGGGTTGGCGAACAAGATCATCGCCTACCGGCTGGGCCTGTCGACCCGCACGGTCGAAACCTATCGCGCGCATCTGATGGACAAGCTGGAGGTGTCCAGCCTGTCGGACGCGGTGCGCCTGGCGCTCGAGGCGGGGCTGGAGCCCAAGGGCGCGATCGTGCGCGCCGACGGGCCGGGCTGA 1575 0.687 MGFKVFSDVRYDAASGTLRFVKIDPQHGRREMSLPVHPADRPTLANLDAHDDVMAEFRVGSGAEAEWHLLLAHDHDPAFERWRFGCVVRLRTAKAFQTEMRHHARLMELGGMASALSHELRQPLFTIALAAENGRLSLTQSDEASGRAAQKFDRIIEQVDRATAIVERTSGYARLERGGSEPISIIDAIQNAARFMRPVLSERDIALRITAPASLPILELPRVGIEQIIVNALQNAADSIDTARAAGDAGPARITIDLAQRDRMVEVVIDDTGTGLADAVAGTAFDAFSTTKPIGKGTGLGLFVCRQIMDEPTAHAYVVDDDAALRAELADTLAAAGLEVRTFPDGRAFLDEQAMLPEGCVVLDVNMPGLSGREVQDELRRTGSHHQIVMLTGAATVPLAVEALHAGAADFIEKPMRPATLRQAVMRALERLRQDQRARGRTAAAQRCLERLSDRERDVLAGLVLGLANKIIAYRLGLSTRTVETYRAHLMDKLEVSSLSDAVRLALEAGLEPKGAIVRADGPG 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000167g0017 524 Gene3D - 317 439 - -
Bisa1000167g0017 524 SMART HisKA_10 108 178 IPR003661 GO:0000155|GO:0007165
Bisa1000167g0017 524 ProSiteProfiles LuxR-type HTH domain profile. 445 510 IPR000792 GO:0006355
Bisa1000167g0017 524 PRINTS Bacterial sensor protein C-terminal signature 296 314 IPR004358 GO:0016310|GO:0016772
Bisa1000167g0017 524 PRINTS Bacterial sensor protein C-terminal signature 265 279 IPR004358 GO:0016310|GO:0016772
Bisa1000167g0017 524 PRINTS Bacterial sensor protein C-terminal signature 283 293 IPR004358 GO:0016310|GO:0016772
Bisa1000167g0017 524 Gene3D - 440 511 IPR036388 -
Bisa1000167g0017 524 CDD LuxR_C_like 452 508 IPR000792 GO:0006355
Bisa1000167g0017 524 Pfam Bacterial regulatory proteins, luxR family 452 506 IPR000792 GO:0006355
Bisa1000167g0017 524 SUPERFAMILY CheY-like 316 456 IPR011006 -
Bisa1000167g0017 524 Pfam His Kinase A (phospho-acceptor) domain 109 178 IPR003661 GO:0000155|GO:0007165
Bisa1000167g0017 524 SMART luxrmega5 449 506 IPR000792 GO:0006355
Bisa1000167g0017 524 Pfam Response regulator receiver domain 318 425 IPR001789 GO:0000160
Bisa1000167g0017 524 ProSiteProfiles Response regulatory domain profile. 315 429 IPR001789 GO:0000160
Bisa1000167g0017 524 CDD HisKA 106 174 IPR003661 GO:0000155|GO:0007165
Bisa1000167g0017 524 SMART REC_2 314 425 IPR001789 GO:0000160
Bisa1000167g0017 524 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 181 310 IPR036890 -
Bisa1000167g0017 524 Gene3D - 177 316 IPR036890 -
Bisa1000167g0017 524 ProSitePatterns LuxR-type HTH domain signature. 466 493 IPR000792 GO:0006355
Bisa1000167g0017 524 SUPERFAMILY C-terminal effector domain of the bipartite response regulators 441 511 IPR016032 GO:0003677|GO:0006355
Bisa1000167g0017 524 PANTHER - 300 511 - -
Bisa1000167g0017 524 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 224 310 IPR003594 -
Bisa1000167g0017 524 SMART HKATPase_4 220 333 IPR003594 -
Bisa1000167g0017 524 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 101 178 IPR036097 GO:0000155|GO:0007165
Bisa1000167g0017 524 Gene3D - 89 172 - -
Bisa1000167g0017 524 ProSiteProfiles Histidine kinase domain profile. 115 310 IPR005467 -
Bisa1000167g0017 524 PRINTS LuxR bacterial regulatory protein HTH signature 466 482 IPR000792 GO:0006355
Bisa1000167g0017 524 PRINTS LuxR bacterial regulatory protein HTH signature 452 466 IPR000792 GO:0006355
Bisa1000167g0017 524 PRINTS LuxR bacterial regulatory protein HTH signature 482 494 IPR000792 GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa1000167g0017 Response_reg 4.3e-23 CL0304