Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000163g0012 ATGCCTAATATTTACAACGCTCTGGTAGTTAAGGGTCGAGATACTGTTGGTCAACAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTAAGTGTTCCAGTCGGCGGAGCAACTCTAGGACGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCCGCGCCTGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGCCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGACGATTTGACCGATCCTGCTCCTGCCACCACATTTGCCCATTTAGATGCTACTACCGTACTATCAAGAGGATTGGCTGCTAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGGATCGTTGGTGAAGAACACTATGAAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGTTAGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAGCCTTTTTTCGTAGCAGAAGTATTTACCGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCCGAACAGGCCTTTTATTTGGTAGCTGTAGATATCGGTATTTTGAGAATACGCCTTAACGACCAATGGTTAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAGACCACTGTTTTAGTAAATGATGCGGAGAAGGGTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCTGAAGGCAAGAGACAAACAATTGAGGCAAATCTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATATGATTTCGTAA 1125 0.4169 MPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVDDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVAVDIGILRIRLNDQWLTMALMGGFARIGNNETTVLVNDAEKGSDIDPQEAQQTLEIAEANLSKAEGKRQTIEANLALRRARTRVEAINMIS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000163g0012 374 Gene3D - 59 137 IPR027417 -
Bisa1000163g0012 374 Gene3D - 330 374 - -
Bisa1000163g0012 374 Pfam ATP synthase alpha/beta family, beta-barrel domain 1 56 IPR004100 GO:0046034|GO:1902600
Bisa1000163g0012 374 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 327 370 IPR020547 -
Bisa1000163g0012 374 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 58 IPR036121 GO:0046034|GO:1902600
Bisa1000163g0012 374 NCBIfam ATP synthase F1 subunit epsilon 269 371 IPR001469 GO:0015986|GO:0045261|GO:0046933
Bisa1000163g0012 374 FunFam ATP synthase subunit beta, chloroplastic 1 58 - -
Bisa1000163g0012 374 CDD F1-ATPase_delta 275 364 IPR001469 GO:0015986|GO:0045261|GO:0046933
Bisa1000163g0012 374 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 269 323 IPR036771 -
Bisa1000163g0012 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 182 IPR027417 -
Bisa1000163g0012 374 Gene3D - 182 287 IPR024034 -
Bisa1000163g0012 374 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 269 322 IPR020546 GO:0015986
Bisa1000163g0012 374 Gene3D - 138 181 IPR027417 -
Bisa1000163g0012 374 ProSitePatterns ATP synthase alpha and beta subunits signature. 169 178 IPR020003 GO:0005524
Bisa1000163g0012 374 CDD ATP-synt_F1_beta_C 185 283 - -
Bisa1000163g0012 374 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 181 283 - -
Bisa1000163g0012 374 FunFam ATP synthase subunit beta 181 289 - -
Bisa1000163g0012 374 PANTHER ATP SYNTHASE 138 284 - -
Bisa1000163g0012 374 Hamap ATP synthase epsilon chain [atpC]. 242 369 IPR001469 GO:0015986|GO:0045261|GO:0046933
Bisa1000163g0012 374 Coils Coil 337 357 - -
Bisa1000163g0012 374 Gene3D - 1 58 - -
Bisa1000163g0012 374 CDD ATP-synt_F1_beta_N 1 59 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000163g0012 55 137 Primary Pumps ATPases(2) AT4G38510 35.165 5.68e-07 49.3