Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000157g0016 ATGATTGCGGTCAACCGCGTCACCAAGGTGGTGAAGGGCGGCCGCACGCTGTCCTTCGCAGCACTGACGGTGGTCGGTGACGGCGACGGTCGCATCGGTATGGGCAAGGGCAAGGCCAAGGAAGTGCCCGTGGCCGTGCAAAAGGCGATGGAATCTGCCCGTCGCAACATGATCAAGGTGCAACTGCGTAACGGCACCATCCAGCACAACGTGGTGGGTGAGCACGGCGCAGCGTACGTGATCATGGCTCCGGCGCCTGCTGGTACCGGCGTGATCGCCGGTGGCCCGATGCGTGCCGTGTTCGAAGTGATGGGCGTGACCGACATCGTGACCAAGAGCCACGGTTCGACCAACCCGTACAACATGGTTCGTGCCACGCTGGACGCGCTCAAGCGCTGCTCCACGCCCGCCGAAGTGGCGGCCAAGCGCGGCAAGACACTGGTGCGCAGCCCTATCGGTTGCCGTGCCTCCCACCGTGCCACCGTGACTGGCCTGGGCCTTCGCAAGCTCAACAGCACTCGCACGCTGGAAGACACGCCCGCGGTGCGCGGCATGATCAACAAGATCGCCTACCTCGTGCAGGTGCTGTAA 591 0.6447 MIAVNRVTKVVKGGRTLSFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMESARRNMIKVQLRNGTIQHNVVGEHGAAYVIMAPAPAGTGVIAGGPMRAVFEVMGVTDIVTKSHGSTNPYNMVRATLDALKRCSTPAEVAAKRGKTLVRSPIGCRASHRATVTGLGLRKLNSTRTLEDTPAVRGMINKIAYLVQVL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000157g0016 196 Pfam Ribosomal protein L30p/L7e 146 193 IPR016082 -
Bisa1000157g0016 196 Hamap 30S ribosomal protein S5 [rpsE]. 1 149 IPR005712 GO:0003735|GO:0006412|GO:0015935
Bisa1000157g0016 196 SUPERFAMILY Ribosomal protein S5 domain 2-like 65 145 IPR020568 -
Bisa1000157g0016 196 ProSitePatterns Ribosomal protein S5 signature. 14 46 IPR018192 -
Bisa1000157g0016 196 Pfam Ribosomal protein S5, N-terminal domain 2 61 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bisa1000157g0016 196 Hamap 50S ribosomal protein L30 [rpmD]. 140 196 IPR005996 GO:0003735|GO:0006412|GO:0015934
Bisa1000157g0016 196 Gene3D - 149 196 IPR036919 -
Bisa1000157g0016 196 Gene3D - 1 59 - -
Bisa1000157g0016 196 CDD Ribosomal_L30 146 195 IPR005996 GO:0003735|GO:0006412|GO:0015934
Bisa1000157g0016 196 Gene3D - 60 148 IPR014721 -
Bisa1000157g0016 196 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 2 148 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bisa1000157g0016 196 Pfam Ribosomal protein S5, C-terminal domain 73 143 IPR005324 GO:0003735|GO:0005840|GO:0006412
Bisa1000157g0016 196 NCBIfam 50S ribosomal protein L30 146 195 IPR005996 GO:0003735|GO:0006412|GO:0015934
Bisa1000157g0016 196 NCBIfam 30S ribosomal protein S5 1 147 IPR005712 GO:0003735|GO:0006412|GO:0015935
Bisa1000157g0016 196 ProSitePatterns Ribosomal protein L30 signature. 161 193 IPR018038 -
Bisa1000157g0016 196 ProSiteProfiles S5 double stranded RNA-binding domain profile. 1 60 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bisa1000157g0016 196 FunFam 30S ribosomal protein S5 61 151 - -
Bisa1000157g0016 196 SUPERFAMILY Ribosomal protein L30p/L7e 146 195 IPR036919 -
Bisa1000157g0016 196 SUPERFAMILY dsRNA-binding domain-like 2 62 - -
Bisa1000157g0016 196 FunFam 30S ribosomal protein S5 1 58 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000157g0016 7 132 Cytoplasmic Ribosomal Protein Gene Family AT1G58380 34.074 5.84e-17 75.1