Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000080g0002 ATGCACCACCTGTATCCGCGTTCCCGAAGGCACCCCTTTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCTGAGTGGCAGTAAGCGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG 351 0.4644 MHHLYPRSRRHPFLSRGFAACQALSGSKRDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000080g0002 116 NCBIfam 30S ribosomal protein S12 24 113 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa1000080g0002 116 FunFam Ribosomal protein S12, mitochondrial 6 115 - -
Bisa1000080g0002 116 Pfam Ribosomal protein S12/S23 27 111 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0002 116 Gene3D - 6 115 IPR012340 -
Bisa1000080g0002 116 PRINTS Ribosomal protein S12 signature 40 55 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0002 116 PRINTS Ribosomal protein S12 signature 108 116 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0002 116 PRINTS Ribosomal protein S12 signature 56 75 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0002 116 PRINTS Ribosomal protein S12 signature 25 40 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0002 116 PRINTS Ribosomal protein S12 signature 92 108 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0002 116 PRINTS Ribosomal protein S12 signature 75 92 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0002 116 SUPERFAMILY Nucleic acid-binding proteins 28 113 IPR012340 -
Bisa1000080g0002 116 CDD Ribosomal_S12 37 108 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa1000080g0002 116 ProSitePatterns Ribosomal protein S12 signature. 41 48 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0002 116 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 36 113 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000080g0002 5 97 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 35.644 1.73e-09 50.4