Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000080g0001 ATGAAAGGAATATCCTCTCGAGGTAATCATATTTGCTTCGGTAGATATGCTCTTCAGGCACTTGAACCCACTTGGATCACATCTAGACAAATAGAAGCAGGGCGGCGGGCAATGTCACGAAATGCCCGCCGCGGTGGAAAAATATGGGTACGCATATTTCCAGACAAACCGGTTACAGTAAGACCTACAGAAACACGTATGGGGTCGGGAAAAGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCAGCCGATAACAGCGGAGCCCGCGAATTGATGTGTATTCAAATCATAGGAACTAGTAATCGACGATATGCTTATATTGGTGACGTTATTGTTGCTGTAATCAAGGAAGCAGTACCAAATACACCTTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAACGGTATGATAATACAATATGATGATAATGCTGCGGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGCGAATTCCTAGAATTTTAGGAGGGATGGGGATTGTAATTCTTTCTACTTCTCGAGATGTACGGGGTCAGGTGATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACAAGAAGGGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGACAGTAGCGGATCAAGGTATGCAACGAGCGGAAGTCATGATAAAAGGTCCCGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGTGGTCAAGCCGACACAATAGGCATTGCGATGCGAAGAGCTTTGCTCGGAGAAATAGAAGGAACATGTATCACACGTGCAAAATCTGATAAAATACCACATGAATATTCTACCATAGTGGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAAAAATTGTATTGAGAAGTAATCTGTATGGAACTCGGGACGCGTCTATTTGTGTCAAGGGTCCTGGATATGTAACTGCTCAAGACATAATTTTACCACCTTCTGTGGAAATCGTTGATAATACACAACATATAGCTAACCTAACAGAACCTATTAATTTGTGTATTGAATTACAAATCGAGAGGAATCACGGATATTGTATACAAACACTAAATACCTTTCAAGACGGAAGTTATCCTATAGATGCTGTATTCATGCCTGTTCGAAATGCAAACCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACAAATGGAAATGAAAATGTAGGTTTTGAATCTTTAGCACAAATCCATATACTCGGAATAGGTTCAAAATGGAATAGATGTATCTAG 1419 0.4031 MKGISSRGNHICFGRYALQALEPTWITSRQIEAGRRAMSRNARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPADNSGARELMCIQIIGTSNRRYAYIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRNNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPERIPRILGGMGIVILSTSRDVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGQADTIGIAMRRALLGEIEGTCITRAKSDKIPHEYSTIVGIQESVHEILMNLKKIVLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNHGYCIQTLNTFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGNENVGFESLAQIHILGIGSKWNRCI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000080g0001 472 Pfam Ribosomal protein L14p/L23e 80 193 IPR000218 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 CDD RNAP_alpha_NTD 280 447 - -
Bisa1000080g0001 472 Pfam Ribosomal protein S11 210 281 IPR001971 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 NCBIfam 50S ribosomal protein L14 81 193 IPR005745 GO:0003735|GO:0006412|GO:0015934
Bisa1000080g0001 472 Gene3D - 304 416 IPR036643 -
Bisa1000080g0001 472 FunFam 50S ribosomal protein L14, chloroplastic 77 195 - -
Bisa1000080g0001 472 SUPERFAMILY RBP11-like subunits of RNA polymerase 280 448 IPR036603 GO:0006351|GO:0046983
Bisa1000080g0001 472 Pfam RNA polymerase Rpb3/RpoA insert domain 308 397 IPR011262 GO:0003899|GO:0006351|GO:0046983
Bisa1000080g0001 472 FunFam DNA-directed RNA polymerase subunit alpha 299 416 - -
Bisa1000080g0001 472 SUPERFAMILY Ribosomal protein L16p/L10e 1 83 IPR036920 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 CDD Ribosomal_L16_L10e 7 83 IPR016180 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 Hamap 30S ribosomal protein S11 [rpsK]. 127 309 IPR001971 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 SUPERFAMILY Translational machinery components 209 280 - -
Bisa1000080g0001 472 Gene3D Ribosomal protein S11 205 303 IPR036967 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 NCBIfam 50S ribosomal protein L16 1 83 IPR000114 GO:0003735|GO:0006412|GO:0019843
Bisa1000080g0001 472 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 SUPERFAMILY Ribosomal protein L14 78 194 IPR036853 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 Pfam Ribosomal protein L16p/L10e 2 83 IPR016180 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 299 417 IPR036643 -
Bisa1000080g0001 472 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Bisa1000080g0001 472 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Bisa1000080g0001 472 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Bisa1000080g0001 472 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Bisa1000080g0001 472 Gene3D Ribosomal protein L14 82 194 IPR036853 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 Gene3D Ribosomal protein L10e/L16 1 81 IPR036920 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 ProSitePatterns Ribosomal protein L14 signature. 133 159 IPR019972 -
Bisa1000080g0001 472 SMART Ribosomal_L14_2 79 195 IPR000218 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 SMART rpoldneu2 270 467 IPR011263 GO:0003899|GO:0006351
Bisa1000080g0001 472 Hamap 50S ribosomal protein L14 [rplN]. 60 195 IPR000218 GO:0003735|GO:0005840|GO:0006412
Bisa1000080g0001 472 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 79 193 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000080g0001 79 191 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 35.897 1.87e-14 68.6