Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000077g0005 ATGATACGGATCAACCCCTCTTCTTGCGCCAAAGATCTTACCATTTCCGAAAGTGGCAGTAAGCGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG 330 0.4394 MIRINPSSCAKDLTISESGSKRDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000077g0005 109 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 29 106 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 SUPERFAMILY Nucleic acid-binding proteins 19 106 IPR012340 -
Bisa1000077g0005 109 CDD Ribosomal_S12 30 101 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa1000077g0005 109 FunFam Ribosomal protein S12, mitochondrial 4 108 - -
Bisa1000077g0005 109 NCBIfam 30S ribosomal protein S12 13 106 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa1000077g0005 109 ProSitePatterns Ribosomal protein S12 signature. 34 41 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 PRINTS Ribosomal protein S12 signature 18 33 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 PRINTS Ribosomal protein S12 signature 68 85 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 PRINTS Ribosomal protein S12 signature 101 109 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 PRINTS Ribosomal protein S12 signature 85 101 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 PRINTS Ribosomal protein S12 signature 49 68 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 PRINTS Ribosomal protein S12 signature 33 48 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 Pfam Ribosomal protein S12/S23 15 104 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 3 108 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0005 109 Gene3D - 3 108 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000077g0005 31 90 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 44.118 5.38e-09 48.9