Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa1000077g0003 ATGTGTATTCAAATCATAGGAACTAGTAATCGACGATATGCTTATATTGGTGACGTTATTGTTGCTGTAATCAAGGAAGCAGTACCAAATACACCTTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAACGGTATGATAATACAATATGATGATAATGCTGCGGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGGACACTATTGCTAACATAATAACCTCTATACGAAATGCTGACATGAATAGAAAAGGGACGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTACAATACTTTTCCGAGAAGGTTTTATTGAAAACGTGAGAAAACATAGGGAAAGCAAGAAAGATTTTTTAATTTTAACTCTACGGCATAGAAGAAATAGGAAAGGATCATATAAAACTATTTTGAATTTAAAACGAATCAGTAGACCTGGTCTACGAATCTATTCTAATTATCAGCGAATTCCTAGAATTTTAGGAGGGATGGGGATTGTAATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAGGCTCGATTAGAAAGAATCGGCGGAGAAATTTTATGTTATATATGGTAA 699 0.3505 MCIQIIGTSNRRYAYIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRNNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEDTIANIITSIRNADMNRKGTVRIPSTNITENIVTILFREGFIENVRKHRESKKDFLILTLRHRRNRKGSYKTILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa1000077g0003 232 Hamap 30S ribosomal protein S8 [rpsH]. 99 232 IPR000630 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 ProSitePatterns Ribosomal protein L14 signature. 41 67 IPR019972 -
Bisa1000077g0003 232 Gene3D - 175 232 - -
Bisa1000077g0003 232 Hamap 50S ribosomal protein L14 [rplN]. 2 108 IPR000218 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 SMART Ribosomal_L14_2 1 103 IPR000218 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 SUPERFAMILY Ribosomal protein S8 102 232 IPR035987 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 Pfam Ribosomal protein S8 102 232 IPR000630 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 Pfam Ribosomal protein L14p/L23e 1 101 IPR000218 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 FunFam Ribosomal protein L14 31 103 - -
Bisa1000077g0003 232 ProSitePatterns Ribosomal protein S8 signature. 202 219 IPR000630 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 Gene3D Ribosomal protein L14 1 101 IPR036853 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 Gene3D - 102 174 - -
Bisa1000077g0003 232 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 101 IPR000218 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 FunFam 30S ribosomal protein S8 175 232 - -
Bisa1000077g0003 232 SUPERFAMILY Ribosomal protein L14 1 101 IPR036853 GO:0003735|GO:0005840|GO:0006412
Bisa1000077g0003 232 NCBIfam 50S ribosomal protein L14 1 101 IPR005745 GO:0003735|GO:0006412|GO:0015934
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa1000077g0003 14 99 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 36.047 1.14e-11 58.9