LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g2788	ATGGACAAGTTGCTTTGCAAAATAATCCAAACAACTTACTTGGATTGGCCTAACCATCGGCCTACATCTGGTAGCATCATTTTTTTGGGCCAAAGATCAGCCCAGTCCACTCAGATAAAATGGCCCAAAAGAGGCACTTTTGATAAGGGGTCCAGACTCATAATAACCCTAGATATCCCCCCTTCTCTCTCGCTTGTATTGTGTCGTAGTCTAGCTTTTTCGACCAAGGTCACAAGCTCCTACCTGTTCGTCCTTTATTCCGATTACACCATGGGTTCCAGGAAGGGTGACTCCGGCGATGGTGCCAGTCCTGGGAAAATCTTCATCGGAGGGTTAGCCAGAGATACAACCTTGGAAACATTCGTCAAGTATTTTGAGAAGTATGGAGAGATAACAGACTCGGTGATAATGAAAGATCGGCACACGGGTCGACCCAGGGGTTTCGGTTTCATTACCTATGCAGATCCTTCTGTTGTTGACCAAGTTATTCAGGAGAACCATGTGATCAATGGCAAGCAGGTTGAGATCAAAAGGACTATTCCAAAGGGTTCATCACAAGCTAATGATTTTAAAACTAAGAAAATATTTGTTGGTGGTATTCCAACTGCAGTAAGTGAAGATGAATTGAAGAACTTCTTCTCAAAGTACGGGAAGGTCGTGGAACATGAGATTATACGTGACCATACTACTAAACGTTCTCGGGGGTTTGGCTTTGTTGTCTTTGACAATGAAAAAGTAGTTGATAATTTGCTGGCAAATGGAAATATGATTGATATGGCGGGTACTCAGGTTGAGATCAAGAAGGCTGAGCCAAAGAAAGCCTCAAACCCAGCATCTTTTCCTCCATTTGGTAGTGATAGGGCACGCTCATACAGTGATGGTTATGGTGGATTTGGCGAATCTTATAGCGGTTTTGGCAGTGGTGGTTTTGGTACTGCTCCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTGGAGATTACGGTGGGTATGGTGGTGGAGATGAATTTGGTGATAGTTTTGGGGGTTATGGTGGTGGTGGTTTTGCTGGCTATCGAGGAGAGCCATCATTTGGCTATTCCAGTCGCTATGGTTCCTATATGGGGGGCCTTGGCAGTGGATATGGTGGAAGTGGGCTAGGTGCATACGGGCGAGGCGCTGGGGGCTTTGGAAGCTATGGTGGACCAGGTTCTGGTGGGGGTTATGACTCTGGCCCTGGTGCTGGCTATGGTGGGCCAGGGGGGATGTATGGTAGTAGGGGAAGTTATGGTGGCAGTAGTCGCTACCATCCTTATGCAAGATAG	1305	0.4659	MDKLLCKIIQTTYLDWPNHRPTSGSIIFLGQRSAQSTQIKWPKRGTFDKGSRLIITLDIPPSLSLVLCRSLAFSTKVTSSYLFVLYSDYTMGSRKGDSGDGASPGKIFIGGLARDTTLETFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTAVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFVVFDNEKVVDNLLANGNMIDMAGTQVEIKKAEPKKASNPASFPPFGSDRARSYSDGYGGFGESYSGFGSGGFGTAPYRSLGGFGSRLGDYGGYGGGDEFGDSFGGYGGGGFAGYRGEPSFGYSSRYGSYMGGLGSGYGGSGLGAYGRGAGGFGSYGGPGSGGGYDSGPGAGYGGPGGMYGSRGSYGGSSRYHPYAR	434

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g2788	434	SUPERFAMILY	RNA-binding domain, RBD	99	185	IPR035979	GO:0003676
	Bisa09g2788	434	FunFam	Heterogeneous nuclear ribonucleoprotein 1	104	185	-	-
	Bisa09g2788	434	Gene3D	-	105	184	IPR012677	-
	Bisa09g2788	434	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	105	181	IPR000504	GO:0003723
	Bisa09g2788	434	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	107	173	IPR000504	GO:0003723
	Bisa09g2788	434	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	195	255	IPR000504	GO:0003723
	Bisa09g2788	434	Gene3D	-	185	313	IPR012677	-
	Bisa09g2788	434	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	95	434	-	-
	Bisa09g2788	434	FunFam	Heterogeneous nuclear ribonucleoprotein 1	186	310	-	-
	Bisa09g2788	434	SUPERFAMILY	RNA-binding domain, RBD	189	300	IPR035979	GO:0003676
	Bisa09g2788	434	SMART	rrm1_1	106	177	IPR000504	GO:0003723
	Bisa09g2788	434	SMART	rrm1_1	194	267	IPR000504	GO:0003723
	Bisa09g2788	434	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	193	271	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g2788	Bisa-ChrBisa09	61064581	61067063	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g2788	95	257	Eukaryotic Initiation Factors Gene Family	AT1G71770	26.486	7.55e-13	68.6