LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g2758	ATGTCGAATCCTAAGCGTCAGCGTGAATCCCGGACAACTGGGTCTGACAATTCGCCCCTTCGGCATGAAGAACAGATTCAGCATCGCAGTGTGAGTAGTGCAGATGGGCAATACTCAATCGGATTCAAAAGCACCAAGTCTTATCAGCCTCCAGACGCCCTCTATGAAGACCTTGCTCAGAGTTCGGACCTTTTCTGGGAAAAACTACACCGTTTTCATAATTCCTTGGGCACCAAATTAAAAGTCCCTAATATAGGAGGAAAGCCACTAGATCTATATCACCTTTTTATGGAAGTCACTTCTCATGGTGGGCTTGAAAAGGTAATTGGAGATCGTAAATGGAAAGAAGTGATTACAGTCTTCAAATTCCCAGATACCATAACCAGTGCATCATTTGCGTTGCGCAAATATTATCTATCATTGCTTTATGACTTTGAGCAGGTTTATTACTTTGGGAAGCAAGTCCCTTCTTTTTCATCGATTGATCCTGTCAACAGGAGCCTTGCCAGTGATTTAAAGGAAGTTGCTGCTTTGAATGAATTACCAGTTAGTCCGGTTGAGCAACTTGGCTCTTTGGTGCCCGGTACCATTGATTTGAAATTTGATGGTGGATATGTAGTTACTGTGAATCTGGGTTCTGATCAACTGAAAGGTATCCTGTATCATGTTCCTCTCAATGCATCCCAGGGTTCTCATACCGCATCCATGCCTACTTCCCAGAACCGGAAGAGATCAAGATTGGGTTTACGTGACCCATCTCGGCCCAAATCAAATAGGAGTGGCTACAACTTCTTCTTTGCTGAGCACTATTCTAGGCTAAAGCCTTCATACTATGGGCAAGAGAGAGCAATTAGTAAGAAGATTGGGTTTTTGTGGAACCATCTCACAGAAGCTGAAAGACAGATTTATCAGGAGAAAGGGCGGAGGGATAAGGAGAGATACAAGACTGAAATGAAGGAGTACAAATCGTCGAATAATTCGATTTCTCAGTAG	993	0.432	MSNPKRQRESRTTGSDNSPLRHEEQIQHRSVSSADGQYSIGFKSTKSYQPPDALYEDLAQSSDLFWEKLHRFHNSLGTKLKVPNIGGKPLDLYHLFMEVTSHGGLEKVIGDRKWKEVITVFKFPDTITSASFALRKYYLSLLYDFEQVYYFGKQVPSFSSIDPVNRSLASDLKEVAALNELPVSPVEQLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGILYHVPLNASQGSHTASMPTSQNRKRSRLGLRDPSRPKSNRSGYNFFFAEHYSRLKPSYYGQERAISKKIGFLWNHLTEAERQIYQEKGRRDKERYKTEMKEYKSSNNSISQ	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g2758	330	MobiDBLite	consensus disorder prediction	230	256	-	-
	Bisa09g2758	330	Gene3D	High mobility group box domain	238	330	IPR036910	-
	Bisa09g2758	330	SMART	hmgende2	254	323	IPR009071	-
	Bisa09g2758	330	SMART	ARID_2	56	146	-	-
	Bisa09g2758	330	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	255	322	IPR009071	-
	Bisa09g2758	330	SMART	bright_3	60	151	IPR001606	GO:0003677
	Bisa09g2758	330	SUPERFAMILY	ARID-like	58	155	IPR036431	GO:0003677
	Bisa09g2758	330	MobiDBLite	consensus disorder prediction	1	29	-	-
	Bisa09g2758	330	MobiDBLite	consensus disorder prediction	1	34	-	-
	Bisa09g2758	330	Pfam	ARID/BRIGHT DNA binding domain	63	146	IPR001606	GO:0003677
	Bisa09g2758	330	Pfam	HMG (high mobility group) box	255	322	IPR009071	-
	Bisa09g2758	330	SUPERFAMILY	HMG-box	249	325	IPR036910	-
	Bisa09g2758	330	ProSiteProfiles	ARID domain profile.	59	150	IPR001606	GO:0003677
	Bisa09g2758	330	CDD	HMG-box_AtHMGB9-like	255	321	-	-
	Bisa09g2758	330	Gene3D	-	42	160	IPR036431	GO:0003677
	Bisa09g2758	330	PANTHER	HIGH MOBILITY GROUP B PROTEIN 9	30	329	-	-
	Bisa09g2758	330	CDD	ARID_HMGB9-like	61	146	IPR045303	GO:0003677
	Bisa09g2758	330	MobiDBLite	consensus disorder prediction	306	330	-	-
	Bisa09g2758	330	MobiDBLite	consensus disorder prediction	306	320	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g2758	Bisa-ChrBisa09	60006439	60018875	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g2758	53	327	ARID Transcription Factor Family	AT3G13350	53.659	1.06e-101	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Bisa09g2758		ARID	8.5e-20	CL0123