Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g2633 ATGCCAGAAAATCGGCAGGTTCCGAAGAATGCTGCTTCCAATCAATCTGGTGACAGCATTGAAGAAGCCATTTGGCGTTTGAAAATCAATGATAATCGGGAAAGAAATGCCGTGGCTCTATCAACCCAATATCCGGATCGACCTGGTGAACCTGACTGCTTGTATTATTTGAGGACTGGGCTGTGTGGTTACGGGAGTAACTGTCGCTATAATCACCCTGTTCATCTTGCACTTGGTGCTCAATATGCTGAAGAACTCCCTGAGAGAATTGGACAACCTGATTGTGGGTATTTTCTTAAGACAGGGACTTGCAAGTATGGATCAACATGTAAATATCATCATCCGAGGGACAGACGAGGTGCTGCTCCTGTATCCTTCAATGTTTTAGGCCTTCCCATGCGTCAGGAGGAGAAATCATGTCCCTATTACATGCGAACTGGGTTGTGTAAATTTGGAGTTGCTTGCAAGTTTCATCATCCACAGCCTTCCTCCCATGTAAATGCCCCTGCAGCTGGATCTCCTGCCTCAGTTATTCCTTCAACTGGTTTACCATATGTCAATGGGCTTCCTGCGTGGTCTGTACCAAGAATGTCATATTTATCTGGGCAGGGTCTTCAATCTTATGTGCCTGCTTTTCTATCTTCTCCGCAAGGCATTATACCTACACCAAACTGGAACAACTACATGGTTAATTTATCATCAATGAATCCAACCCTCCCAGAGAGGCCTGATCAACCAGAATGTCGATACTTTATGAGCACTGGCACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAAGAACGAGTGGCCCAATCAATGATAAATCCATTAGGCCTTCCTGTGAGACCTGGGCAAGCTATTTGTTCTTATTACAGAACCTATGGAATATGCAAGTATGGCCCAACTTGCAAATTTGATCATCCAGTTGTGACAATTCCTCAGAACTATGGCTTGAGCCCACCTACCTTATCTCTATTTGAAACGTCCTTCATAGGTAATCCGACTGGGTTGTCAACAATCCAACCCCCTGAAACATCTCCGTCTAAATTATCGAGCAACAAGCTGCAGCACTCTGATACAAAGTCTACAGAAGATTCATCAAAACAAGCTGACACGACACAGAATTCCCTCACCGCCTCCATAGAGTCTTCACATGATCAAACTGATTGA 1179 0.4453 MPENRQVPKNAASNQSGDSIEEAIWRLKINDNRERNAVALSTQYPDRPGEPDCLYYLRTGLCGYGSNCRYNHPVHLALGAQYAEELPERIGQPDCGYFLKTGTCKYGSTCKYHHPRDRRGAAPVSFNVLGLPMRQEEKSCPYYMRTGLCKFGVACKFHHPQPSSHVNAPAAGSPASVIPSTGLPYVNGLPAWSVPRMSYLSGQGLQSYVPAFLSSPQGIIPTPNWNNYMVNLSSMNPTLPERPDQPECRYFMSTGTCKYGSDCKFHHPKERVAQSMINPLGLPVRPGQAICSYYRTYGICKYGPTCKFDHPVVTIPQNYGLSPPTLSLFETSFIGNPTGLSTIQPPETSPSKLSSNKLQHSDTKSTEDSSKQADTTQNSLTASIESSHDQTD 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g2633 392 PANTHER PROTEIN PHOSPHATASE RELATED 15 350 - -
Bisa09g2633 392 Gene3D - 7 85 - -
Bisa09g2633 392 Gene3D - 197 281 - -
Bisa09g2633 392 SUPERFAMILY CCCH zinc finger 283 311 IPR036855 GO:0046872
Bisa09g2633 392 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Bisa09g2633 392 Gene3D - 284 371 - -
Bisa09g2633 392 Gene3D - 90 173 - -
Bisa09g2633 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 287 311 IPR000571 GO:0046872
Bisa09g2633 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Bisa09g2633 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 244 269 IPR000571 GO:0046872
Bisa09g2633 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Bisa09g2633 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Bisa09g2633 392 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Bisa09g2633 392 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Bisa09g2633 392 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Bisa09g2633 392 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Bisa09g2633 392 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Bisa09g2633 392 SMART c3hfinal6 242 269 IPR000571 GO:0046872
Bisa09g2633 392 MobiDBLite consensus disorder prediction 370 392 - -
Bisa09g2633 392 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Bisa09g2633 392 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Bisa09g2633 392 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Bisa09g2633 392 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Bisa09g2633 392 MobiDBLite consensus disorder prediction 337 360 - -
Bisa09g2633 392 MobiDBLite consensus disorder prediction 337 392 - -
Bisa09g2633 392 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Bisa09g2633 392 ProSiteProfiles Zinc finger C3H1-type profile. 242 270 IPR000571 GO:0046872
Bisa09g2633 392 SUPERFAMILY CCCH zinc finger 245 271 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g2633 Bisa-ChrBisa09 55617588 55621222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g2633 1 379 C3H Transcription Factor Family AT1G04990 47.826 2.16e-117 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa09g2633 zf-CCCH 4e-09 CL0537